Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 222095021

GI number: 222095021

Start: 1350528

End: 1351328

Strand: Direct

Name: potC [H]

Synonym: BCQ_1361

Alternate gene names: 222095021

Gene position: 1350528-1351328 (Clockwise)

Preceding gene: 222095020

Following gene: 222095022

Centisome position: 25.9

GC content: 34.58

Gene sequence:

>801_bases
ATGAAGAAGTTTTTAGTTTCTTATTCTTGGTTAATTTTATTGTTCTTGTATTTTCCAATGATGGTTTTAATGGTGTATTC
CTTCAATGATTCTCGCATTAATGCGGAATGGGAAGGATTCACATTCCATTGGTATACAGATTTATTTCAAAAACAAGATG
TTATTGATGCGTTTGTAAATAGTATGACGATTGCGGTCGTAACGACGATTGTAACGACTGTTCTTGGTGTGATTTTCGCA
ATTGCATTACATCGTTATAAATATCGTTATGAAGGTGCGATTAACGGTCTTGTATATTTACCAATTTTAATTCCTGATAT
TTTAATGGGATTATCTTTACTTATTTTATTTAGTCAATTAGGTATGGAACTTGGTAAAACAACAATTATTATTGCACACA
TTACATTTAGTATTTCATTTGTTGTCGTTATTTTAGCAGCACGCCTTTCTGGTATGGGACGTGATTTAGAAGAGGCTGCG
AACGATTTAGGAGCAACGCCGTGGCAAACGTTTCGTTTTGTAACGTTCCCAGCAATTGCACCTGGAGTTATTTCGGCTGC
ATTATTAACATTCACATTATCAATTGATGATTTTGTAATTAGTTTCTTCGTATCAGGACCAGGATCAACAACATTGCCAT
TATACATTTACAGTATGGTTAAGCGCGGAGTATCACCAGAAATTAATGCACTTTCTACAATTTTAATTGTGGCTATCGTA
GGATTAATGGTTCTATCTGAAATCTTCCGTAACAAAGGTGCAGATGGTGAAGAAAACTCTGGAGGACACCTTCCTTTATA
A

Upstream 100 bases:

>100_bases
ATCTATGATTGTTGTTCTATTCTCTGTTCTGTTAATTTACTTATATTATCGTGCAACGAAAGTATATAAATATGATGGGA
ACGGAGGGGAATAGGCAAAG

Downstream 100 bases:

>100_bases
TACGAACGATATAGAAAGTACGAGGAGGTAATAAAACCGATGAAATTAATGAAAAGATTAGCCGGCGCAGCAATTAGCTT
TAGCCTTATTGCTGGTGTAC

Product: spermidine/putrescine ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWEGFTFHWYTDLFQKQDVIDAFVNSMTIAVVTTIVTTVLGVIFA
IALHRYKYRYEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAA
NDLGATPWQTFRFVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVAIV
GLMVLSEIFRNKGADGEENSGGHLPL

Sequences:

>Translated_266_residues
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWEGFTFHWYTDLFQKQDVIDAFVNSMTIAVVTTIVTTVLGVIFA
IALHRYKYRYEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAA
NDLGATPWQTFRFVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVAIV
GLMVLSEIFRNKGADGEENSGGHLPL
>Mature_266_residues
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWEGFTFHWYTDLFQKQDVIDAFVNSMTIAVVTTIVTTVLGVIFA
IALHRYKYRYEGAINGLVYLPILIPDILMGLSLLILFSQLGMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAA
NDLGATPWQTFRFVTFPAIAPGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVAIV
GLMVLSEIFRNKGADGEENSGGHLPL

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=236, Percent_Identity=42.3728813559322, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI1787081, Length=238, Percent_Identity=44.5378151260504, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1787714, Length=257, Percent_Identity=31.5175097276265, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788764, Length=174, Percent_Identity=31.0344827586207, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787713, Length=215, Percent_Identity=24.6511627906977, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29476; Mature: 29476

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWEGFTFHWYTDLFQKQDVIDAFVN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCEECCEEEHHHHHHHHHHHHHHHHHH
SMTIAVVTTIVTTVLGVIFAIALHRYKYRYEGAINGLVYLPILIPDILMGLSLLILFSQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH
GMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRFVTFPAIA
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHEEECCHHH
PGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVAIV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GLMVLSEIFRNKGADGEENSGGHLPL
HHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKFLVSYSWLILLFLYFPMMVLMVYSFNDSRINAEWEGFTFHWYTDLFQKQDVIDAFVN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCEECCEEEHHHHHHHHHHHHHHHHHH
SMTIAVVTTIVTTVLGVIFAIALHRYKYRYEGAINGLVYLPILIPDILMGLSLLILFSQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH
GMELGKTTIIIAHITFSISFVVVILAARLSGMGRDLEEAANDLGATPWQTFRFVTFPAIA
HHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHEEECCHHH
PGVISAALLTFTLSIDDFVISFFVSGPGSTTLPLYIYSMVKRGVSPEINALSTILIVAIV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GLMVLSEIFRNKGADGEENSGGHLPL
HHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]