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The map label for this gene is ydeE [H]

Identifier: 222094840

GI number: 222094840

Start: 1168060

End: 1168806

Strand: Direct

Name: ydeE [H]

Synonym: BCQ_1178

Alternate gene names: 222094840

Gene position: 1168060-1168806 (Clockwise)

Preceding gene: 222094837

Following gene: 222094841

Centisome position: 22.4

GC content: 39.09

Gene sequence:

>747_bases
ATGGAGTATGTTCGGAAGAGGAGGTTAGCCCGGGCAGCTTATCAACTTTCTCATACGGATGAAAAAATTATTGATATCGC
ATTTGAACATGGCTTTCAATCTCACGAAACGTTCACGAGAGCCTTTAAAAAATTATTTCAAATGACACCGAGTGAATATC
GAAAGCAGGAAATAGAAACACCGATGTATTACAGCGTGAATGTAAAGCAAAGAAAATTAAATCCGTATTTAGGAGGCATA
CAAATGGAATATCGTATTGTAAATAAACCGGAATTTTTAGTGGCGGGTTATGAACTGAAGACGACAAGTAAAGAAGGGAA
GAACCATCAAGACATTCCAGCATTTTGGCAAGAATATTTACAAAAAGATCTTGGAACGACAATTCCGAATCGTAAAGATA
CGAGCCAATGGGTAGAGCTTGGATTATGTACTGATTTTAATTTAGAAACAGGGGACTTCACTTATATTATCGGAATGGAA
GTCACAGACTTTGAAAATGTACCAAATGAAATTGCAAAGCGCACGTTCCCGGCAGCAACATATGCGGTATTTACAACGCC
GAAAGTTCCTCATGAAGAAATGGTATCGTCTATTCACCAAACGTGGAATGCAGTATTCTCAGAGTGGTTCCCGCATTCAG
GATACGAACATTGCGGCGTTACAGAGTTTGAATTATACGATGAGCGTTGTCACGAAGATAAAAGTGAGTTCGCTCAAGTA
GAGCTTTGGATACCGGTGAAGAAATAA

Upstream 100 bases:

>100_bases
TGTAATGGAAAAACAGACGCTGCGTAAGTTAGCTCGCATTGCAGGTTTTTCTGAGTCGCATTTTCATCGTGTATTCCAGG
CGTTAGTAGGTGATACGGTA

Downstream 100 bases:

>100_bases
TAGGGTAAGAGCGAATCATTGGGAGGTGGTTCGCTTTTTTATAAAGGGAGAGTGGGAATATGTTCAAAAAACTAGAATGT
GTATCTATACATACGAAGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MEYVRKRRLARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGI
QMEYRIVNKPEFLVAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGME
VTDFENVPNEIAKRTFPAATYAVFTTPKVPHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQV
ELWIPVKK

Sequences:

>Translated_248_residues
MEYVRKRRLARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGI
QMEYRIVNKPEFLVAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGME
VTDFENVPNEIAKRTFPAATYAVFTTPKVPHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQV
ELWIPVKK
>Mature_248_residues
MEYVRKRRLARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGI
QMEYRIVNKPEFLVAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGME
VTDFENVPNEIAKRTFPAATYAVFTTPKVPHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQV
ELWIPVKK

Specific function: Unknown

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29222; Mature: 29222

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYVRKRRLARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIET
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCC
PMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLVAGYELKTTSKEGKNHQDIPAFWQEYL
CEEEEEECHHHHCCCCCCCEEEEEEEECCCCEEEECEEEEECCCCCCCCCCCHHHHHHHH
QKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAAT
HHHHCCCCCCCCCCHHHHHEECCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCCE
YAVFTTPKVPHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQV
EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHEEE
ELWIPVKK
EEEEECCC
>Mature Secondary Structure
MEYVRKRRLARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIET
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCC
PMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLVAGYELKTTSKEGKNHQDIPAFWQEYL
CEEEEEECHHHHCCCCCCCEEEEEEEECCCCEEEECEEEEECCCCCCCCCCCHHHHHHHH
QKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAAT
HHHHCCCCCCCCCCHHHHHEECCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCCCE
YAVFTTPKVPHEEMVSSIHQTWNAVFSEWFPHSGYEHCGVTEFELYDERCHEDKSEFAQV
EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHEEE
ELWIPVKK
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]