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The map label for this gene is oppD [H]

Identifier: 222094658

GI number: 222094658

Start: 987432

End: 988274

Strand: Direct

Name: oppD [H]

Synonym: BCQ_0996

Alternate gene names: 222094658

Gene position: 987432-988274 (Clockwise)

Preceding gene: 222094657

Following gene: 222094659

Centisome position: 18.94

GC content: 41.76

Gene sequence:

>843_bases
ATGGCGAAGTCCGTTATGTCTCTCGTTGCGTCACCAGGGAAAGTGAAAGAAGGGGAGATTCTTTTTCATAATGAAAACAT
CCTTTCTAAATCTGAAAAAGAATTACGTTCTATTAGAGGAAATCAAATTTCACTTATCTCGCAAGATCCAATGTCAGCGC
TAAATCCGGTCGTGAAAATTGGGAAACAGATGATGGAAGTAATTATACGTCATCAAAAAGTGAAAAAGAAAGAAGCAGAG
CAGATCGCGGTTAACTTGTTAAAGCAAGTCGGTCTTTCGTCGCCAGAAGAAAGGGTAAAACAATATCCGCACGAACTAAG
CGGTGGTATGAAGCAGCGGGTTATGATTGCGATGGCAATGTCTTGTAATCCAGATCTTCTCATTGCGGATGAACCGACGA
CAGCGCTTGATGTAACGATACAAGCACAAATACTAGATTTAATGAAAAACTTAAAAAATGAAACGAATATGGCGTTACTT
CTTATTACACATGACTTAGGGATAGTCGCGCAAAACTGTACACGCGTTATCGTTATGTATGGCGGGCTTATTATGGAAGA
GGGATCTGTACTTGATATTTTCCAATCGCCGAATCATCCATATACGAAGGGGCTATTAAACTCTTTACCGAAAATATCGA
ACGGTGTAAAAGAAAGGCTCGCACCAATTCAAGGTGTAACGCCAAACTTATTACACCCGCCACAAGGTTGCCCATTCGCA
GAGCGTTGTCCGCATGCAATGGAAATTTGTGAAAAAGAACGTCCACCGTATTTTGAAATCGGAGACGGAAGGCGTTCCAT
GTGCTGGTTAAATGATAGGGCGGTAGGTGATTCCCATGCATGA

Upstream 100 bases:

>100_bases
AGAAAGTGGAGAAGTGGAAGCTGTTCGCGGCGTTACATTTCGTTTAAATAAAGGAGAAGTAGTTGGTATCGTTGGGGAAT
CTGGAAGCGGAAAGAGTGTA

Downstream 100 bases:

>100_bases
AGAAAATTTAATTGAAGTTCGGAACTTAAAAAAGTATTTTCCTATTAAAAAAGGACTATTTGGCAGAAAAACAGAGCAAT
TAAAAGCAGTCGATGACTTA

Product: oligopeptide ABC transporter ATP-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MAKSVMSLVASPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMMEVIIRHQKVKKKEAE
QIAVNLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALL
LITHDLGIVAQNCTRVIVMYGGLIMEEGSVLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPQGCPFA
ERCPHAMEICEKERPPYFEIGDGRRSMCWLNDRAVGDSHA

Sequences:

>Translated_280_residues
MAKSVMSLVASPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMMEVIIRHQKVKKKEAE
QIAVNLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALL
LITHDLGIVAQNCTRVIVMYGGLIMEEGSVLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPQGCPFA
ERCPHAMEICEKERPPYFEIGDGRRSMCWLNDRAVGDSHA
>Mature_279_residues
AKSVMSLVASPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKIGKQMMEVIIRHQKVKKKEAEQ
IAVNLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLL
ITHDLGIVAQNCTRVIVMYGGLIMEEGSVLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPQGCPFAE
RCPHAMEICEKERPPYFEIGDGRRSMCWLNDRAVGDSHA

Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system. Expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI48994883, Length=268, Percent_Identity=50, Blast_Score=272, Evalue=2e-74,
Organism=Escherichia coli, GI1789963, Length=265, Percent_Identity=48.6792452830189, Blast_Score=266, Evalue=1e-72,
Organism=Escherichia coli, GI1787759, Length=257, Percent_Identity=46.692607003891, Blast_Score=238, Evalue=3e-64,
Organism=Escherichia coli, GI1788506, Length=210, Percent_Identity=47.6190476190476, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI145693107, Length=209, Percent_Identity=46.88995215311, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI1789962, Length=256, Percent_Identity=33.59375, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787500, Length=259, Percent_Identity=36.6795366795367, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787758, Length=247, Percent_Identity=35.6275303643725, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787548, Length=258, Percent_Identity=32.9457364341085, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789890, Length=172, Percent_Identity=39.5348837209302, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI48994997, Length=198, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1787547, Length=171, Percent_Identity=31.5789473684211, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1786398, Length=192, Percent_Identity=32.8125, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787029, Length=129, Percent_Identity=37.984496124031, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789891, Length=171, Percent_Identity=35.672514619883, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789032, Length=195, Percent_Identity=30.2564102564103, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788225, Length=199, Percent_Identity=30.1507537688442, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788644, Length=201, Percent_Identity=30.8457711442786, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789672, Length=138, Percent_Identity=34.7826086956522, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787089, Length=185, Percent_Identity=32.4324324324324, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1786872, Length=192, Percent_Identity=31.25, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=26.2672811059908, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786563, Length=109, Percent_Identity=40.3669724770642, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87081709, Length=209, Percent_Identity=28.2296650717703, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786703, Length=186, Percent_Identity=29.0322580645161, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787712, Length=152, Percent_Identity=30.9210526315789, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790162, Length=198, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081834, Length=119, Percent_Identity=41.1764705882353, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788450, Length=186, Percent_Identity=27.4193548387097, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786345, Length=184, Percent_Identity=27.1739130434783, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=24.8780487804878, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87081791, Length=168, Percent_Identity=27.9761904761905, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788761, Length=153, Percent_Identity=25.4901960784314, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787164, Length=99, Percent_Identity=39.3939393939394, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789873, Length=179, Percent_Identity=27.3743016759777, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786803, Length=179, Percent_Identity=26.2569832402235, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790739, Length=105, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787105, Length=184, Percent_Identity=27.7173913043478, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48995001, Length=106, Percent_Identity=33.9622641509434, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788165, Length=75, Percent_Identity=38.6666666666667, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786319, Length=121, Percent_Identity=33.8842975206612, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=175, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 31037; Mature: 30906

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSVMSLVASPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKI
CHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
GKQMMEVIIRHQKVKKKEAEQIAVNLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHHHH
SCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMY
CCCCCEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHH
GGLIMEEGSVLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPQGCPFA
CCEEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ERCPHAMEICEKERPPYFEIGDGRRSMCWLNDRAVGDSHA
HHCCHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
AKSVMSLVASPGKVKEGEILFHNENILSKSEKELRSIRGNQISLISQDPMSALNPVVKI
HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
GKQMMEVIIRHQKVKKKEAEQIAVNLLKQVGLSSPEERVKQYPHELSGGMKQRVMIAMAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCHHHHHHHHHHH
SCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMY
CCCCCEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHH
GGLIMEEGSVLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPQGCPFA
CCEEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ERCPHAMEICEKERPPYFEIGDGRRSMCWLNDRAVGDSHA
HHCCHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]