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The map label for this gene is ykkC [H]

Identifier: 222094580

GI number: 222094580

Start: 897347

End: 897691

Strand: Direct

Name: ykkC [H]

Synonym: BCQ_0918

Alternate gene names: 222094580

Gene position: 897347-897691 (Clockwise)

Preceding gene: 222094579

Following gene: 222094581

Centisome position: 17.21

GC content: 37.39

Gene sequence:

>345_bases
ATGAAAAATAGAGCTTGGTTATATGTCATATTAACATGTATCTTTGAAATTTTTTGGGTGTTTGGTTTTAATACAGCCAA
TACTTGGTGGCATTGGATTATTATTTTAGGCGTTATCGCTGTTGATTTTCACTTCCTTTCTAAAGCGTGTGAACATCTTG
CAACAGGGACTGTATATGCTGTTTTCGCCGGAGCTGGTACGGTAGGTACTTTCTTAATGGATGTATTCCTTTTCGGCGGG
AGTTTCAGTGTAGGAAAATTATTCTTTATCGTGATGGTTGTAGCTGGCGTTATCGGTTTAAAGCTAGCTGATAATAAAGA
AGATACTATGGAAGGAGCTGCTTAA

Upstream 100 bases:

>100_bases
AATAGTAAATGAGGATGATAGTTGTTTATATAGTAGTAATGAAAGATCATATTTTTTTAAAACAAAAATGACTGATAGTC
AGTCATAAGAGGTGAGAGGT

Downstream 100 bases:

>100_bases
AGATGGGTTGGTTTTTCGTATTTTGTGCTGCAATTAGTGAAATAGTCGGTGTGATCGGTCTGAAAATGTATAGTAAAGAT
AAAACGTTAGCAAATGGTGC

Product: quaternary ammonium compound-resistance protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYAVFAGAGTVGTFLMDVFLFGG
SFSVGKLFFIVMVVAGVIGLKLADNKEDTMEGAA

Sequences:

>Translated_114_residues
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYAVFAGAGTVGTFLMDVFLFGG
SFSVGKLFFIVMVVAGVIGLKLADNKEDTMEGAA
>Mature_114_residues
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYAVFAGAGTVGTFLMDVFLFGG
SFSVGKLFFIVMVVAGVIGLKLADNKEDTMEGAA

Specific function: Part of a multidrug efflux pump. Confers resistance to a broad range of toxic compounds such as cationic dyes, neutral and anionic antimicrobials [H]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family. YkkC/ykkD (TC 2.A.7.1.5) subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 12608; Mature: 12608

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYA
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VFAGAGTVGTFLMDVFLFGGSFSVGKLFFIVMVVAGVIGLKLADNKEDTMEGAA
HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKNRAWLYVILTCIFEIFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYA
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VFAGAGTVGTFLMDVFLFGGSFSVGKLFFIVMVVAGVIGLKLADNKEDTMEGAA
HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA