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The map label for this gene is rbsB [H]

Identifier: 222094505

GI number: 222094505

Start: 829909

End: 831021

Strand: Reverse

Name: rbsB [H]

Synonym: BCQ_0843

Alternate gene names: 222094505

Gene position: 831021-829909 (Counterclockwise)

Preceding gene: 222094506

Following gene: 222094504

Centisome position: 15.94

GC content: 35.76

Gene sequence:

>1113_bases
ATGAAAAAACTATGTTCCATCTTACTTATTTTTCTCTTATTTACATTAACAGCTTGTACAAATGAACAAGATGCTATCTC
TTCACAAAAGCAACAAACTGTGAAGCAGGCAACTACAATGGTAGAAAAACAATTACAAACAGAAGTTCCAATCCAAATGA
AGAAGCCATTAAAAATCGCATTAATTATGCAAATGTCCATCGGAACTTTTTCCTCTCAATATATTGAGGGCGTCAAAAAA
CAAGTTGAGCTATTTGGCGGCAGTGTACAAGTCTACAATTCTGATAATGATTTAGCAAAAATGGCTGCAAATTTAGATAC
TGCTATTAATTCAAAAGTGGATGGTATTTTAATTGATCATGGCCGTTCTGAAGCACTAAAACCCGGAGTAGAAAAAGCAT
TACAGGCGAACATTCCCGTAGTTGCGTTCGATAACGATCTACGCTTGCCAGGTGTGACAATTATCGATCAAGATGACTAT
AGTCTTGCTTGGAAATCTTTAAAAACGTTAGCGGAAGATTTGAATGGAGAAGGAAATATCGCAGTTGTATGGGTTGGCGG
ATTTGCTCCAATGGAACGCCGCAATGTTATCATTGATGCCTTTTATAAACGGTATCCAAATATAAAAGAAGTTGCAAGGT
TCGGTACTGCTAGTAATAACACACCGCTTGATACACAAACACAAGTAGAAGCTTTACTAAAGAAATATCCGAAAAAAGGC
GATTTACAAGCTATTTTCGCTTCGTGGGATGAGTTTGCTAAAGGGGCTGTTAAAGCACTTGAACAAGCTGGTCGTACAGA
TATAAAAGTATATGGCATTGACTTAAGTAATGAAGATTTACAACTCATGCAAAAAGAAAACTCACCTTGGACTGCTACAG
CTGCAACTGACCCAGCTGAAGTAGGTAAGGTTCAAGTACGATTTTTATACAAAAAAATTGCTGGTGAACAAACGCCAGAT
ATTTATTCACTAGAACCTTATTTAGTAAAGAAAAATAGTTTACCGAAAGAAAATATAACAATGGATCATTTATCAAAATA
TATAAATGGTTGGGGAGACTCAAAAGATGCATATTCCCCTTGGATGAAAAAATTAGAGAAGGAGAAAAAATGA

Upstream 100 bases:

>100_bases
GAAAGATAAGAGTAATATGATAAGACGTCTTTTCTATATGAAAAGGCGTTTTTTATTTTCACTCCCTCCTCTCTCTTCTT
AGTTTAGGAGGGATTTTTTT

Downstream 100 bases:

>100_bases
TGACGTTCTCTCTTCAAAACATTACACATTCTTATCATATCGCTACACCTGTTCTAGAAGATGTTTCTATTCATATTCAA
AAAGGAAAAGTGCACGCTTT

Product: ribose ABC transporter substrate-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MKKLCSILLIFLLFTLTACTNEQDAISSQKQQTVKQATTMVEKQLQTEVPIQMKKPLKIALIMQMSIGTFSSQYIEGVKK
QVELFGGSVQVYNSDNDLAKMAANLDTAINSKVDGILIDHGRSEALKPGVEKALQANIPVVAFDNDLRLPGVTIIDQDDY
SLAWKSLKTLAEDLNGEGNIAVVWVGGFAPMERRNVIIDAFYKRYPNIKEVARFGTASNNTPLDTQTQVEALLKKYPKKG
DLQAIFASWDEFAKGAVKALEQAGRTDIKVYGIDLSNEDLQLMQKENSPWTATAATDPAEVGKVQVRFLYKKIAGEQTPD
IYSLEPYLVKKNSLPKENITMDHLSKYINGWGDSKDAYSPWMKKLEKEKK

Sequences:

>Translated_370_residues
MKKLCSILLIFLLFTLTACTNEQDAISSQKQQTVKQATTMVEKQLQTEVPIQMKKPLKIALIMQMSIGTFSSQYIEGVKK
QVELFGGSVQVYNSDNDLAKMAANLDTAINSKVDGILIDHGRSEALKPGVEKALQANIPVVAFDNDLRLPGVTIIDQDDY
SLAWKSLKTLAEDLNGEGNIAVVWVGGFAPMERRNVIIDAFYKRYPNIKEVARFGTASNNTPLDTQTQVEALLKKYPKKG
DLQAIFASWDEFAKGAVKALEQAGRTDIKVYGIDLSNEDLQLMQKENSPWTATAATDPAEVGKVQVRFLYKKIAGEQTPD
IYSLEPYLVKKNSLPKENITMDHLSKYINGWGDSKDAYSPWMKKLEKEKK
>Mature_370_residues
MKKLCSILLIFLLFTLTACTNEQDAISSQKQQTVKQATTMVEKQLQTEVPIQMKKPLKIALIMQMSIGTFSSQYIEGVKK
QVELFGGSVQVYNSDNDLAKMAANLDTAINSKVDGILIDHGRSEALKPGVEKALQANIPVVAFDNDLRLPGVTIIDQDDY
SLAWKSLKTLAEDLNGEGNIAVVWVGGFAPMERRNVIIDAFYKRYPNIKEVARFGTASNNTPLDTQTQVEALLKKYPKKG
DLQAIFASWDEFAKGAVKALEQAGRTDIKVYGIDLSNEDLQLMQKENSPWTATAATDPAEVGKVQVRFLYKKIAGEQTPD
IYSLEPYLVKKNSLPKENITMDHLSKYINGWGDSKDAYSPWMKKLEKEKK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=277, Percent_Identity=27.0758122743682, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 41279; Mature: 41279

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLCSILLIFLLFTLTACTNEQDAISSQKQQTVKQATTMVEKQLQTEVPIQMKKPLKIA
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEE
LIMQMSIGTFSSQYIEGVKKQVELFGGSVQVYNSDNDLAKMAANLDTAINSKVDGILIDH
EEEEHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEC
GRSEALKPGVEKALQANIPVVAFDNDLRLPGVTIIDQDDYSLAWKSLKTLAEDLNGEGNI
CCCHHCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCE
AVVWVGGFAPMERRNVIIDAFYKRYPNIKEVARFGTASNNTPLDTQTQVEALLKKYPKKG
EEEEECCCCCCHHCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC
DLQAIFASWDEFAKGAVKALEQAGRTDIKVYGIDLSNEDLQLMQKENSPWTATAATDPAE
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCCCCEEEECCCCHHH
VGKVQVRFLYKKIAGEQTPDIYSLEPYLVKKNSLPKENITMDHLSKYINGWGDSKDAYSP
HHHHHHHHHHHHHCCCCCCCEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHH
WMKKLEKEKK
HHHHHHHCCC
>Mature Secondary Structure
MKKLCSILLIFLLFTLTACTNEQDAISSQKQQTVKQATTMVEKQLQTEVPIQMKKPLKIA
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEE
LIMQMSIGTFSSQYIEGVKKQVELFGGSVQVYNSDNDLAKMAANLDTAINSKVDGILIDH
EEEEHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEC
GRSEALKPGVEKALQANIPVVAFDNDLRLPGVTIIDQDDYSLAWKSLKTLAEDLNGEGNI
CCCHHCCHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCE
AVVWVGGFAPMERRNVIIDAFYKRYPNIKEVARFGTASNNTPLDTQTQVEALLKKYPKKG
EEEEECCCCCCHHCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCC
DLQAIFASWDEFAKGAVKALEQAGRTDIKVYGIDLSNEDLQLMQKENSPWTATAATDPAE
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCCCCEEEECCCCHHH
VGKVQVRFLYKKIAGEQTPDIYSLEPYLVKKNSLPKENITMDHLSKYINGWGDSKDAYSP
HHHHHHHHHHHHHCCCCCCCEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCHHHH
WMKKLEKEKK
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]