Click here to switch to the map view.

The map label for this gene is ssuB [C]

Identifier: 222094176

GI number: 222094176

Start: 467509

End: 468117

Strand: Direct

Name: ssuB [C]

Synonym: BCQ_0469

Alternate gene names: 222094176

Gene position: 467509-468117 (Clockwise)

Preceding gene: 222094175

Following gene: 222094177

Centisome position: 8.97

GC content: 36.62

Gene sequence:

>609_bases
ATGATCGCAAATGTTGAAAATCCAACAAGTGGAAGTGTAACGTATAACGATAAACAAATACAAGAGCAAGATATTGTAAG
TTATATGCCGCAACAGGATTTATTACTACCGTGGCGATCAGCTTTACAAAATATCGTTCTTCCGTTAGAAATTGAAGGGA
AGCCGAAAAAACAAAGGCTGACAGAAGGAATGGAAGCATTAAAGCAGTTTGAACTAGATGAATATGCAGACCATTATCCA
GATGAATTGTCTGGAGGGATGCGTCAAAGAATTAGTTTTCTGCGCACATATTTATGTGAAAAGCCAATTATGCTACTTGA
TGAGCCTTTTGGTAAATTAGATGCTTTTACAAAAATGGAAGTACATAGCTGGCTTTTACACTCTTGGCACCAAGAGAAGC
AAACAATCGTTATGGTTACACACGACTTAGATGAGGCAATCTTGCTTTCGGATCGCGTATTTATTTTATCTCAAAGACCA
GCATCAATAGTTGGTGAGGTACAAGTGAAATTACCTAGGCCGAGAACGATGGATATGTTAACATCACTTGAGTTAAAGAA
AGATAAGGAAGAAATTTTGAGAGTATTAGCTCCTTATATGAAAAAATAG

Upstream 100 bases:

>100_bases
TGGCAAGAATGTATTAGCAAATATTAGTGCTTCTATACGAGAGGGAGAATTTGTTTCTTTTGTAGGACCGAGTGGTTGCG
GGAAAAGTACACTATTAAAT

Downstream 100 bases:

>100_bases
AAAAAGCCTTTTAACAGTTTTTGGTATGATTACTGTTAAGAGGCTTTTTTATATAGGGGGAGAAAGATGAAAACTATAGA
GAAAATAGTAGATGAATTAA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MIANVENPTSGSVTYNDKQIQEQDIVSYMPQQDLLLPWRSALQNIVLPLEIEGKPKKQRLTEGMEALKQFELDEYADHYP
DELSGGMRQRISFLRTYLCEKPIMLLDEPFGKLDAFTKMEVHSWLLHSWHQEKQTIVMVTHDLDEAILLSDRVFILSQRP
ASIVGEVQVKLPRPRTMDMLTSLELKKDKEEILRVLAPYMKK

Sequences:

>Translated_202_residues
MIANVENPTSGSVTYNDKQIQEQDIVSYMPQQDLLLPWRSALQNIVLPLEIEGKPKKQRLTEGMEALKQFELDEYADHYP
DELSGGMRQRISFLRTYLCEKPIMLLDEPFGKLDAFTKMEVHSWLLHSWHQEKQTIVMVTHDLDEAILLSDRVFILSQRP
ASIVGEVQVKLPRPRTMDMLTSLELKKDKEEILRVLAPYMKK
>Mature_202_residues
MIANVENPTSGSVTYNDKQIQEQDIVSYMPQQDLLLPWRSALQNIVLPLEIEGKPKKQRLTEGMEALKQFELDEYADHYP
DELSGGMRQRISFLRTYLCEKPIMLLDEPFGKLDAFTKMEVHSWLLHSWHQEKQTIVMVTHDLDEAILLSDRVFILSQRP
ASIVGEVQVKLPRPRTMDMLTSLELKKDKEEILRVLAPYMKK

Specific function: Part Of A Binding-Protein-Dependent Transport System For Aliphatic Sulfonates. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1116

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI105990541, Length=156, Percent_Identity=26.2820512820513, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI116734710, Length=172, Percent_Identity=26.7441860465116, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI31657092, Length=173, Percent_Identity=28.3236994219653, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1787164, Length=195, Percent_Identity=32.8205128205128, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1786563, Length=196, Percent_Identity=31.6326530612245, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1789032, Length=140, Percent_Identity=35.7142857142857, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788761, Length=168, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082267, Length=169, Percent_Identity=31.9526627218935, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787712, Length=181, Percent_Identity=32.0441988950276, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081834, Length=157, Percent_Identity=31.8471337579618, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1790467, Length=173, Percent_Identity=31.2138728323699, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786253, Length=161, Percent_Identity=31.055900621118, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787370, Length=160, Percent_Identity=28.75, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1787029, Length=182, Percent_Identity=31.3186813186813, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787105, Length=115, Percent_Identity=35.6521739130435, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI87081791, Length=170, Percent_Identity=28.8235294117647, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87081709, Length=184, Percent_Identity=27.7173913043478, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1788225, Length=169, Percent_Identity=30.1775147928994, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786703, Length=153, Percent_Identity=28.1045751633987, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786398, Length=166, Percent_Identity=29.5180722891566, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1788450, Length=183, Percent_Identity=27.8688524590164, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789672, Length=135, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1787089, Length=165, Percent_Identity=30.9090909090909, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788053, Length=143, Percent_Identity=28.6713286713287, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789593, Length=134, Percent_Identity=24.6268656716418, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI115533608, Length=163, Percent_Identity=27.6073619631902, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=165, Percent_Identity=28.4848484848485, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=201, Percent_Identity=24.3781094527363, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24666092, Length=172, Percent_Identity=29.6511627906977, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23511; Mature: 23511

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIANVENPTSGSVTYNDKQIQEQDIVSYMPQQDLLLPWRSALQNIVLPLEIEGKPKKQRL
CCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHCEEEEEECCCCHHHHH
TEGMEALKQFELDEYADHYPDELSGGMRQRISFLRTYLCEKPIMLLDEPFGKLDAFTKME
HHHHHHHHHCCHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
VHSWLLHSWHQEKQTIVMVTHDLDEAILLSDRVFILSQRPASIVGEVQVKLPRPRTMDML
HHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCEEEEECCCHHHEEEEEEECCCCHHHHHH
TSLELKKDKEEILRVLAPYMKK
HHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIANVENPTSGSVTYNDKQIQEQDIVSYMPQQDLLLPWRSALQNIVLPLEIEGKPKKQRL
CCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHCEEEEEECCCCHHHHH
TEGMEALKQFELDEYADHYPDELSGGMRQRISFLRTYLCEKPIMLLDEPFGKLDAFTKME
HHHHHHHHHCCHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
VHSWLLHSWHQEKQTIVMVTHDLDEAILLSDRVFILSQRPASIVGEVQVKLPRPRTMDML
HHHHHHHHHHCCCCEEEEEEECCCCHHHHCCCEEEEECCCHHHEEEEEEECCCCHHHHHH
TSLELKKDKEEILRVLAPYMKK
HHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]