Click here to switch to the map view.

The map label for this gene is ydiC [H]

Identifier: 222094018

GI number: 222094018

Start: 257462

End: 258154

Strand: Direct

Name: ydiC [H]

Synonym: BCQ_0291

Alternate gene names: 222094018

Gene position: 257462-258154 (Clockwise)

Preceding gene: 222094017

Following gene: 222094019

Centisome position: 4.94

GC content: 35.93

Gene sequence:

>693_bases
ATGAAAGTACTAGCAATTGATACTTCAAATTATGTAATGGGTGTATCCCTTATTGAAGAAGGAAACGTAATTGGGGAAAT
CATTACAAATTTAACAAAAAATCATTCTGTGCGTCTTATGCCAGCTGTAGAACAACTGTTAAAAGAATGCGGTGTAAAAC
CGAAAGAATTAACTAAAATAGTTGTAGCTGCTGGACCAGGATCATATACAGGTGTTCGTATAGGTGTGACAGCTGCCAAA
ACATTAGCTTGGTCACTTCAAATACCAATTGTGGGTGTATCAAGTTTAGAAGTAGTGGCTGCAAACGGGGCTAATTTTGA
TGGATTAATCTGTCCTTTATTCGATGGAAGACGTGGACAAATTTATACTGGCTTATATACATATGAGGGAGAGGATTTAA
CTTCTATAGAGGAAGACCGAATCATCCTTATTGTAGACTGGTTGCAAATGTTAAAAGATAAAGGAAAGCCTGTTTTATTT
ATTGGTAACGATGTGAAACTACACAAAGAAACAATTATTGAACATTTAGGCAATCAAGCTGTCTTTGCTCCTGTCACTAA
AAATAACCCAAGACCAAGTGAGCTAGCGTTCTTAGGATTACAAAAAGAAGAACAAGATGTACATTCATTTGTTCCTAGTT
ACCTTCGTTTAGCTGAAGCTGAAACAAAGTGGTTAGAAAGTCAAAACAAGTAG

Upstream 100 bases:

>100_bases
CTACAAATTAGTTTATTCCATGCTGGAGATGACACAAGAAACATTGTACTCGAGCCAATTGGAGATCGCTATATTAGATT
ATGTGAGGAGCTATTACAAG

Downstream 100 bases:

>100_bases
GAGCTTGCAGAGGATGGATATGATATTTAGAAAGATGGAACTTGATGATATTGCTCAAATTGTAGCCATTGAAGAAGCAT
CTTTTTCAACTCCTTGGACT

Product: o-sialoglycoprotein endopeptidase (glycoprotease)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKVLAIDTSNYVMGVSLIEEGNVIGEIITNLTKNHSVRLMPAVEQLLKECGVKPKELTKIVVAAGPGSYTGVRIGVTAAK
TLAWSLQIPIVGVSSLEVVAANGANFDGLICPLFDGRRGQIYTGLYTYEGEDLTSIEEDRIILIVDWLQMLKDKGKPVLF
IGNDVKLHKETIIEHLGNQAVFAPVTKNNPRPSELAFLGLQKEEQDVHSFVPSYLRLAEAETKWLESQNK

Sequences:

>Translated_230_residues
MKVLAIDTSNYVMGVSLIEEGNVIGEIITNLTKNHSVRLMPAVEQLLKECGVKPKELTKIVVAAGPGSYTGVRIGVTAAK
TLAWSLQIPIVGVSSLEVVAANGANFDGLICPLFDGRRGQIYTGLYTYEGEDLTSIEEDRIILIVDWLQMLKDKGKPVLF
IGNDVKLHKETIIEHLGNQAVFAPVTKNNPRPSELAFLGLQKEEQDVHSFVPSYLRLAEAETKWLESQNK
>Mature_230_residues
MKVLAIDTSNYVMGVSLIEEGNVIGEIITNLTKNHSVRLMPAVEQLLKECGVKPKELTKIVVAAGPGSYTGVRIGVTAAK
TLAWSLQIPIVGVSSLEVVAANGANFDGLICPLFDGRRGQIYTGLYTYEGEDLTSIEEDRIILIVDWLQMLKDKGKPVLF
IGNDVKLHKETIIEHLGNQAVFAPVTKNNPRPSELAFLGLQKEEQDVHSFVPSYLRLAEAETKWLESQNK

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=145, Percent_Identity=30.3448275862069, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 25273; Mature: 25273

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLAIDTSNYVMGVSLIEEGNVIGEIITNLTKNHSVRLMPAVEQLLKECGVKPKELTKI
CEEEEEECCCEEEEEEEEECCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCHHHEEEE
VVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAANGANFDGLICPLFDGRRGQ
EEEECCCCCCEEEEEEEEEEEEEEEEEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCE
IYTGLYTYEGEDLTSIEEDRIILIVDWLQMLKDKGKPVLFIGNDVKLHKETIIEHLGNQA
EEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHCCCCE
VFAPVTKNNPRPSELAFLGLQKEEQDVHSFVPSYLRLAEAETKWLESQNK
EEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKVLAIDTSNYVMGVSLIEEGNVIGEIITNLTKNHSVRLMPAVEQLLKECGVKPKELTKI
CEEEEEECCCEEEEEEEEECCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCHHHEEEE
VVAAGPGSYTGVRIGVTAAKTLAWSLQIPIVGVSSLEVVAANGANFDGLICPLFDGRRGQ
EEEECCCCCCEEEEEEEEEEEEEEEEEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCE
IYTGLYTYEGEDLTSIEEDRIILIVDWLQMLKDKGKPVLFIGNDVKLHKETIIEHLGNQA
EEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHCCCCE
VFAPVTKNNPRPSELAFLGLQKEEQDVHSFVPSYLRLAEAETKWLESQNK
EEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]