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The map label for this gene is ydcI [H]

Identifier: 222094015

GI number: 222094015

Start: 247573

End: 249741

Strand: Direct

Name: ydcI [H]

Synonym: BCQ_0271

Alternate gene names: 222094015

Gene position: 247573-249741 (Clockwise)

Preceding gene: 222094014

Following gene: 222094016

Centisome position: 4.75

GC content: 36.79

Gene sequence:

>2169_bases
ATGGAAACGGTAGATAATCGACAAGCGTTAATGAAAATGTTAGTGAAGGAATTAGGCTTTACCGAAAAGCAAGTTCGTCA
TGTTATTCAATTAACAGAAGAAGGTAACACAGTTCCATTTATTGCTCGTTACCGAAAAGAATGGACAGGCTCTTTAGATG
AAGTGCAAATTCGTACAATTTTAGAGAGATGGCAATATATAATGCAGCTTGAAGATAGAAAAGAAGAGGTTCTTCGTCTT
ATTGATGAGAAGGGGAAACTGACAGGAGAATTACGTCAGCAAATTGTGAAAGCTACAAAGTTGCAAGAAGTAGAAGATTT
ATATCGTCCATATAAAGAGAAGAGAAGAACGAAAGCAACGATTGCGAAAGAAAAAGGACTAGAGCCATTAGCTGAATGGT
TATTGTTATATACGAAAGAAGATCCGAATCAGAAGGCAATGGAGTTTATAAATGCCGAGAAAGAAGTGCAATCTGCAGAA
GAGGCATTACAAGGTGCTCAAGATATTATTGCAGAAATCGTTTCAGATGAAGCAGCATATCGTAGTTGGATTCGGAATGT
TACTTTTAGAAAAGGTGTTATGTCTTCGGCTGTAAAAGATGAAGAGAAAGATGAAAAAAATATATATGAAATGTATTACG
ATTATGAAGAGCCGTTGCAGAAAGTCGTGCCGCATCGTGTATTAGCGATGAATCGCGGTGAGAAAGAAGATATATTGAGA
GTTTCTGTTGTTCCGCCAGTAGATGAGATAGTAACTTTCTTATATAAGAAAGTAATTCGTGATAACGGTTCAAAAAGTGC
ACAGTATGTAAAGTTAGCAATTGAGGATGGTTATAAACGATTAATTCAATCCTCTATTGAAAGGGAGATTCGAAAAGAAT
TAACAGAAACAGCTGAGGAACAAGCAATACATATTTTTTCTGAGAACTTACGTAATTTGTTATTACAACCTCCAATGAAA
GGAAAGGTTGTGTTAGCTGTAGACCCTGCATATAGAACGGGTTGTAAATTAGCTATCGTAGACGATACGGGGAAAGTTCT
ATATATTGATGTTATTTATCCGCATCCACCAGTGCGTAAATATGAAGATGCAAAAGCGAAAGTTCTTTCTATTATAGATA
AATATCAGGTTGAAATGATTGCGATTGGGAATGGTACAGCTTCTAGAGAATCAGAAGAATTTATAGTTGATGTATTACAA
CATGTGAAACGAGAAGTCTTCTATATTATTGTGAACGAAGCTGGTGCGAGTGTGTATTCGGCTTCTGATTTAGCCCGTGA
GGAATTCCCAGATTTACAGGTTGAAGAAAGAAGTGCGGTTTCTATCGGTAGACGTCTGCAAGATCCACTTGCTGAACTTG
TAAAGATTGATCCTAAATCAGTTGGGGTTGGACAATATCAACATGATGTGTCTCAAAAAAGATTAAATGAATCATTAACG
TTTGTAGTAGAGACAGCAGTTAACCAAGTCGGTGTGAATGTAAATACAGCTTCCGTTGCGTTGTTGCAATATGTTTCAGG
CTTATCAAAAACTGTTGCGAAAAATATTGTAGCAAAGCGTGAAGAAGAAGGGAAATTTACAAAACGAACAGACTTAAAGA
AAATACCACGTCTAGGTGCGAAGACATATGAACAATGTATAGGTTTCTTACGTATATTAGAAGGGGCAAATCCGTTAGAC
CGTACAGGTATTCACCCAGAACAATATAAAAATGTTGAATTGTTATTAAAGAATCTAGGTTTATCAAAAGATGACGTAGG
GCAACCACAATTACAAAAGAGTTTAGAAGAAGTAGAGATTTCTAAGTTGTCGCAAGAAACGGGAGTTGGAGAACCAACAT
TAGTTGATATTATAGATGCACTCATTAGTCCAGAGCGAGACATGAGGGATGAGTTGCCTAAACCGCTTCTGAAAAAAGGG
ATTTTGAAATTAGAAGATTTAAAACGTGGTATGGAACTGGAAGGAACAGTTCGTAACGTTGTTGATTTCGGTGCTTTCGT
TGATGTAGGTGTGAAACAAGATGGGTTAGTACATATTTCTAAACTAAGCAAACAATACGTGAAGCATCCGTTAGATGTTG
TATCTGTCGGACAAATCGTCAAAGTATGGGTAGATGATATTGATACGAAAAAAGGTCGCGTTGCATTATCTATGTTGCCG
GTTGAATAG

Upstream 100 bases:

>100_bases
CTACAAATTAGTTTAGGACTAATAGATTTTTAAATCGGCAGTTTAAGTTGCTCTCTTTGAAGGGCAACTTTTTTTATTAT
AGAGGAGGTTGCGGTTGTAT

Downstream 100 bases:

>100_bases
TAAGAGAAGAGAGCAGATGAAACTGCTCTTTTTTTATAGGATAAAACGTGTAATGGATTAGGAACTTTGATGTATTTTGC
TATAATAAAACCAGCATTCA

Product: transcription accessory protein, s1 RNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 722; Mature: 722

Protein sequence:

>722_residues
METVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTILERWQYIMQLEDRKEEVLRL
IDEKGKLTGELRQQIVKATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAE
EALQGAQDIIAEIVSDEAAYRSWIRNVTFRKGVMSSAVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
VSVVPPVDEIVTFLYKKVIRDNGSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFSENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRKYEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQ
HVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLRILEGANPLD
RTGIHPEQYKNVELLLKNLGLSKDDVGQPQLQKSLEEVEISKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
VE

Sequences:

>Translated_722_residues
METVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTILERWQYIMQLEDRKEEVLRL
IDEKGKLTGELRQQIVKATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAE
EALQGAQDIIAEIVSDEAAYRSWIRNVTFRKGVMSSAVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
VSVVPPVDEIVTFLYKKVIRDNGSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFSENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRKYEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQ
HVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLRILEGANPLD
RTGIHPEQYKNVELLLKNLGLSKDDVGQPQLQKSLEEVEISKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
VE
>Mature_722_residues
METVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTILERWQYIMQLEDRKEEVLRL
IDEKGKLTGELRQQIVKATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAE
EALQGAQDIIAEIVSDEAAYRSWIRNVTFRKGVMSSAVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
VSVVPPVDEIVTFLYKKVIRDNGSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFSENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRKYEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQ
HVKREVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLRILEGANPLD
RTGIHPEQYKNVELLLKNLGLSKDDVGQPQLQKSLEEVEISKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
VE

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=771, Percent_Identity=34.3709468223087, Blast_Score=404, Evalue=1e-112,
Organism=Homo sapiens, GI27597090, Length=550, Percent_Identity=22.1818181818182, Blast_Score=76, Evalue=1e-13,
Organism=Escherichia coli, GI87082262, Length=721, Percent_Identity=44.7988904299584, Blast_Score=572, Evalue=1e-164,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=45.3333333333333, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=754, Percent_Identity=31.4323607427056, Blast_Score=270, Evalue=2e-72,
Organism=Caenorhabditis elegans, GI17552892, Length=315, Percent_Identity=24.4444444444444, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI62484314, Length=746, Percent_Identity=33.1099195710456, Blast_Score=385, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 82124; Mature: 82124

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTI
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
LERWQYIMQLEDRKEEVLRLIDEKGKLTGELRQQIVKATKLQEVEDLYRPYKEKRRTKAT
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAEEALQGAQDIIAEIVSDEAAY
HHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RSWIRNVTFRKGVMSSAVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCHHHHHHCCCCHHCEEE
VSVVPPVDEIVTFLYKKVIRDNGSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEE
EECCCCHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAIHIFSENLRNLLLQPPMKGKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRK
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCC
YEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQHVKREVFYIIVNEAGASVYS
CHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCHHH
ASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH
KTYEQCIGFLRILEGANPLDRTGIHPEQYKNVELLLKNLGLSKDDVGQPQLQKSLEEVEI
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
SKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTVRNV
HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
VDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
VE
CC
>Mature Secondary Structure
METVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTI
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
LERWQYIMQLEDRKEEVLRLIDEKGKLTGELRQQIVKATKLQEVEDLYRPYKEKRRTKAT
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKEKGLEPLAEWLLLYTKEDPNQKAMEFINAEKEVQSAEEALQGAQDIIAEIVSDEAAY
HHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RSWIRNVTFRKGVMSSAVKDEEKDEKNIYEMYYDYEEPLQKVVPHRVLAMNRGEKEDILR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCHHHHHHCCCCHHCEEE
VSVVPPVDEIVTFLYKKVIRDNGSKSAQYVKLAIEDGYKRLIQSSIEREIRKELTETAEE
EECCCCHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAIHIFSENLRNLLLQPPMKGKVVLAVDPAYRTGCKLAIVDDTGKVLYIDVIYPHPPVRK
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCC
YEDAKAKVLSIIDKYQVEMIAIGNGTASRESEEFIVDVLQHVKREVFYIIVNEAGASVYS
CHHHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCHHH
ASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEEGKFTKRTDLKKIPRLGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH
KTYEQCIGFLRILEGANPLDRTGIHPEQYKNVELLLKNLGLSKDDVGQPQLQKSLEEVEI
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
SKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTVRNV
HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
VDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
VE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]