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The map label for this gene is oppC [H]

Identifier: 222093993

GI number: 222093993

Start: 225742

End: 226665

Strand: Direct

Name: oppC [H]

Synonym: BCQ_0249

Alternate gene names: 222093993

Gene position: 225742-226665 (Clockwise)

Preceding gene: 222093992

Following gene: 222093994

Centisome position: 4.33

GC content: 37.45

Gene sequence:

>924_bases
ATGGAAACTGTTACAGTAATTAAAGAGAAGAAAGAAAAAAATAGAAGAAAAAATGAATCATCGCCATGGCGACAAGCTCT
TAAAAAGATAAAAAGAAATAAGATGGCGCTCGTAGGATTGTATGCATTAATTTTTATGTTTATATTTTGTTTTATCGGTC
CGTTCTTTTCGCCGTATGCATCAGGAAAAATACAAGTTACGTTAATTAACAAACCACCTAGTTTTTCTCATTGGCTCGGT
ACAGATCAATTGGGAAGAGATATTTTAACGAGGCTTATGCAAGCGGAACGAATCTCATTAACGATTGGCCTAGCTTCTAT
GGTTTTATCAGTGATATTAGGAGCTGTATTAGGGGCTATTGCAGGATTTTATCGCGGCATCGTTGATAATATTATTATGC
GTCTTGCCGATATTTTAATGTCGATGCCAGGATTACCATTACTTATTATAATGGGAGCGATTTTATCAGAGTGGAAAGTA
CCATCTGATTATCGTCTATATGTCATTATGATTATTTTAAGTTTAGTAGGTTGGCCGGGGCTTGCGCGTCTTGTAAGAGG
TCAAATTTTATCACTTAGAGAGCAAGCGTTTATGCAAGCTGCTGATGTGTTAGGGATAAAAGATTACCGGAAAATTATCT
ATCACTTAATTCCTAATGTTTTACCAATATTAATTGTTGTATCCACATTAGGCGTTGCAGGTTCTATTTTAGGAGAGTCC
GCACTAAGCTACTTAGGTCTCGGCGTTGTCCCACCTACACCATCATGGGGGAATATGATTAGCGCAGCGAACTCATTAAT
TGATTTTCAAAAGCGCCCATGGTTATGGATTCCGCCTGGTTTTGCAATCTTTATAACAGTTGTATCCATTAATTTACTTG
GTGATGCACTTCGTGATGCGTTAGATCCAAAGATGAGACGGTAG

Upstream 100 bases:

>100_bases
GATGTTTCTTTCTTGTTTAACAATCGTTTCAAACTTTTTCGCAGATATCGTATATGCAGTTGTTGATCCGCGAATTCGGT
TGAAGTAAGGGGGGAATGAG

Downstream 100 bases:

>100_bases
GTGAGGGAATATGAGTAAAGCAGTAGTAGAGCTGAAAGATTTACAAACACACTTTCAGACAGAAGAAGGAACAGTAAAAG
CTGTGAATCATGTTAGTTTT

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
METVTVIKEKKEKNRRKNESSPWRQALKKIKRNKMALVGLYALIFMFIFCFIGPFFSPYASGKIQVTLINKPPSFSHWLG
TDQLGRDILTRLMQAERISLTIGLASMVLSVILGAVLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKV
PSDYRLYVIMIILSLVGWPGLARLVRGQILSLREQAFMQAADVLGIKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGES
ALSYLGLGVVPPTPSWGNMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR

Sequences:

>Translated_307_residues
METVTVIKEKKEKNRRKNESSPWRQALKKIKRNKMALVGLYALIFMFIFCFIGPFFSPYASGKIQVTLINKPPSFSHWLG
TDQLGRDILTRLMQAERISLTIGLASMVLSVILGAVLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKV
PSDYRLYVIMIILSLVGWPGLARLVRGQILSLREQAFMQAADVLGIKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGES
ALSYLGLGVVPPTPSWGNMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR
>Mature_307_residues
METVTVIKEKKEKNRRKNESSPWRQALKKIKRNKMALVGLYALIFMFIFCFIGPFFSPYASGKIQVTLINKPPSFSHWLG
TDQLGRDILTRLMQAERISLTIGLASMVLSVILGAVLGAIAGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKV
PSDYRLYVIMIILSLVGWPGLARLVRGQILSLREQAFMQAADVLGIKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGES
ALSYLGLGVVPPTPSWGNMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDALDPKMRR

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=287, Percent_Identity=35.191637630662, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1787760, Length=303, Percent_Identity=31.6831683168317, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787498, Length=308, Percent_Identity=35.3896103896104, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1789964, Length=295, Percent_Identity=37.9661016949153, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789889, Length=248, Percent_Identity=39.9193548387097, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1787549, Length=285, Percent_Identity=30.5263157894737, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788505, Length=235, Percent_Identity=31.9148936170213, Blast_Score=118, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34105; Mature: 34105

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METVTVIKEKKEKNRRKNESSPWRQALKKIKRNKMALVGLYALIFMFIFCFIGPFFSPYA
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGKIQVTLINKPPSFSHWLGTDQLGRDILTRLMQAERISLTIGLASMVLSVILGAVLGAI
CCEEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKVPSDYRLYVIMIILSLVGWPG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHH
LARLVRGQILSLREQAFMQAADVLGIKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSYLGLGVVPPTPSWGNMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDA
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH
LDPKMRR
CCCCCCC
>Mature Secondary Structure
METVTVIKEKKEKNRRKNESSPWRQALKKIKRNKMALVGLYALIFMFIFCFIGPFFSPYA
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGKIQVTLINKPPSFSHWLGTDQLGRDILTRLMQAERISLTIGLASMVLSVILGAVLGAI
CCEEEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGFYRGIVDNIIMRLADILMSMPGLPLLIIMGAILSEWKVPSDYRLYVIMIILSLVGWPG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHH
LARLVRGQILSLREQAFMQAADVLGIKDYRKIIYHLIPNVLPILIVVSTLGVAGSILGES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSYLGLGVVPPTPSWGNMISAANSLIDFQKRPWLWIPPGFAIFITVVSINLLGDALRDA
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH
LDPKMRR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]