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The map label for this gene is 221636342

Identifier: 221636342

GI number: 221636342

Start: 915217

End: 917241

Strand: Reverse

Name: 221636342

Synonym: trd_A0936

Alternate gene names: NA

Gene position: 917241-915217 (Counterclockwise)

Preceding gene: 221636343

Following gene: 221636324

Centisome position: 99.95

GC content: 66.62

Gene sequence:

>2025_bases
ATGGAGAACTTCGACGACGTCTATCGCTGGCGAGTCGGGAAATATCGCGCCTTCTACCGCATCGCGAACTCCCGCATCAT
TCTCATGGCGATCGAGCACCGACGGGACGCCTACCGGCACGACACGCTGCCGAGCGACGATGAGCTGATCCTCATCGAAC
CCGACGACCAGTTCGAACTCCCTGCGCTCGACGACAGTGCGCCGGCTGACGGGGACGTCGAGCCGCTACCGGCCGTACCG
ATGTCACCACCCGGCGATCCGCTCCCCCGTCCGCTGGCCGAGCCCGAACTCGCTCGTCTAGGCGTACCGGCTGACCAGTG
TGGGCCGCTGGCGGCTTGCCGGACCGTCGATGAGCTGCTCGAAGTGCTCGAGCGCCTTCCCCCGGCGATAGCCGATCGGG
TTCTGGCGCTCGCCTTGGGCACCACCCTGGAGGAGGTGCTCGACGACCCGGTCCTTCTCCTCGATGAGTTGCCCCCGTCC
TTTGTGGATGTCCTGCGCGGCCATGTGCCGCTCCACTACCTGCTCGATCCGAGTCAAGAGGACGCCCTGCAGCGGATCAG
GAACCAGGACGGCCCGTTCCTGGTGACTGGTCCACCCGGCAGCGGTAAGACGCTGCTCGGTCTGCTCGCTATCTCGCCGC
TCCTCGCCCGAGCGCGCCAGCGCGGCAATCCCCAGCCACGCGCGCTGTTCGTCACCTTCACTCGTACGCTGGCCCGAACA
CTGGAACGACTCGCCCGCGTGCACCTCTCCGCTGCCGATCGCTTGGCGGTGGCCTTCAAGACCCTGGACAGCCTGGTCAA
CGATCTCGCACCGGACGCGCTTCTCGCTGATGGACCGGCGGTCGTCGCGCTCGTCGCCCAAGCGCGCCAACGCGCTTTCA
CGCGGCCCCTCTCGCCCGACCCCGCGCGCGACCGCAAGCTCGCTGGCTCGCTCCACCGAATCACCAACCTATACATCCAG
GAGGAGATCGAAGAGGTCATTCTCGGTCGCGGTCTCCGCACACTCGAGGAATACCGCGCGGCCGATCGCACTGGTCGCCA
GCTTCCGCTCAATGCCAACCAGCGTGAGGCGATCTGGTGCGTCTATGAGACCCTCAGCGACCTGCTGCGTGAGCAAGGCC
TCTTCCTCCGCGAAGAACGGCGTCAACTCGCCTGGGAAACGGTTCGGCAGGACCCCGCGGTGACGCGCTACGACGTCGTC
GTCGTGGATGAGGTGCACGATCTCTCGCTGACTGCGCTGCGCCTCCTCCATGAATTGTGCCGTCATCCCGAGGCGCTGCT
CTTGCTTGGAGATACCGGTCAGTCGATCTATACGCGGACAGTCCGGTGGGACCTCCTGCGCGCCGAGTTCCCTGGATTGG
TATCCATCGAGCTCTCGACTGGTCATCGCTGTCCACCGGAGATCGCGGCCGCAGCCGAGGCCTACCGAGCCGCGCTCCCG
TTGGATGACTCCCGCGGCGAATCGTCGGCAGTGACCCATCGCAAGCGTCCTGGCCGTTCGCGCCCCCTTCTCGTCCTGCT
GTCGCGCTGGGATGCCTGGCCAGATGCGCTCGCCCGCTGCCTCGCCGAACGTCTCCGTGAACTCCGGTTGACCTCTGGAC
ACGCTGCCGTGCTCGTCCCCACCAATCAGCTGGCCGATGCGGCGTCCGAAGCCTTGTGGGCGCGTGGCTTCGAGGTCAAG
CACGTGCGGGCTGGCCAGGATCTCAGCCAGGGTTCCGGCGTCAAGCTGCTCACGTGGCACAACGCCAAGGGCCTGGAGTT
CGCACTCGTCCTGCTCGTGCTGCCCGATTGGGAGCCGCCCCCTGCCGGCTGGTCCGATTGCGAAGTCGACGAGGTCCGGG
AGTCGATCGCGCTCTGGCGGCGCACCGTCTACGTCGCGATGACCCGTGCCAGCCGCGCGCTCGTCGTCCTGCGCCCGCAG
CACGGCACGAGTGCCTTACTCGAAGGCTTCCCTGCCACTGTATGGGAGTCGGTCACGTTCGCGAGCGAATCGACCGACGC
TCCGAGCGATGGCCTGCCGTTTTGA

Upstream 100 bases:

>100_bases
TGCTCGCTGCGCTGCCGTCCAAGGCGCAGGAACAGGTCTGGCGCAAGCTCCCCGAACTACAGGCCGATCCCCCCCGGATG
GGACCGAGCGCAAGCAGCGG

Downstream 100 bases:

>100_bases
CATATCGAGAGGGTGGCTCGCCTCACGGCGAGCCGCCCTCCCCGGTGAGGGAGGTTGTGAAGTCAAAGGGGCCAACTGGG
GTTGACCGGTGTGGTTTCCA

Product: nerd domain protein

Products: NA

Alternate protein names: Plasmid Stabilization System; Nerd Domain Protein; UvrD/REP Helicase Domain Protein; DNA Helicase

Number of amino acids: Translated: 674; Mature: 674

Protein sequence:

>674_residues
MENFDDVYRWRVGKYRAFYRIANSRIILMAIEHRRDAYRHDTLPSDDELILIEPDDQFELPALDDSAPADGDVEPLPAVP
MSPPGDPLPRPLAEPELARLGVPADQCGPLAACRTVDELLEVLERLPPAIADRVLALALGTTLEEVLDDPVLLLDELPPS
FVDVLRGHVPLHYLLDPSQEDALQRIRNQDGPFLVTGPPGSGKTLLGLLAISPLLARARQRGNPQPRALFVTFTRTLART
LERLARVHLSAADRLAVAFKTLDSLVNDLAPDALLADGPAVVALVAQARQRAFTRPLSPDPARDRKLAGSLHRITNLYIQ
EEIEEVILGRGLRTLEEYRAADRTGRQLPLNANQREAIWCVYETLSDLLREQGLFLREERRQLAWETVRQDPAVTRYDVV
VVDEVHDLSLTALRLLHELCRHPEALLLLGDTGQSIYTRTVRWDLLRAEFPGLVSIELSTGHRCPPEIAAAAEAYRAALP
LDDSRGESSAVTHRKRPGRSRPLLVLLSRWDAWPDALARCLAERLRELRLTSGHAAVLVPTNQLADAASEALWARGFEVK
HVRAGQDLSQGSGVKLLTWHNAKGLEFALVLLVLPDWEPPPAGWSDCEVDEVRESIALWRRTVYVAMTRASRALVVLRPQ
HGTSALLEGFPATVWESVTFASESTDAPSDGLPF

Sequences:

>Translated_674_residues
MENFDDVYRWRVGKYRAFYRIANSRIILMAIEHRRDAYRHDTLPSDDELILIEPDDQFELPALDDSAPADGDVEPLPAVP
MSPPGDPLPRPLAEPELARLGVPADQCGPLAACRTVDELLEVLERLPPAIADRVLALALGTTLEEVLDDPVLLLDELPPS
FVDVLRGHVPLHYLLDPSQEDALQRIRNQDGPFLVTGPPGSGKTLLGLLAISPLLARARQRGNPQPRALFVTFTRTLART
LERLARVHLSAADRLAVAFKTLDSLVNDLAPDALLADGPAVVALVAQARQRAFTRPLSPDPARDRKLAGSLHRITNLYIQ
EEIEEVILGRGLRTLEEYRAADRTGRQLPLNANQREAIWCVYETLSDLLREQGLFLREERRQLAWETVRQDPAVTRYDVV
VVDEVHDLSLTALRLLHELCRHPEALLLLGDTGQSIYTRTVRWDLLRAEFPGLVSIELSTGHRCPPEIAAAAEAYRAALP
LDDSRGESSAVTHRKRPGRSRPLLVLLSRWDAWPDALARCLAERLRELRLTSGHAAVLVPTNQLADAASEALWARGFEVK
HVRAGQDLSQGSGVKLLTWHNAKGLEFALVLLVLPDWEPPPAGWSDCEVDEVRESIALWRRTVYVAMTRASRALVVLRPQ
HGTSALLEGFPATVWESVTFASESTDAPSDGLPF
>Mature_674_residues
MENFDDVYRWRVGKYRAFYRIANSRIILMAIEHRRDAYRHDTLPSDDELILIEPDDQFELPALDDSAPADGDVEPLPAVP
MSPPGDPLPRPLAEPELARLGVPADQCGPLAACRTVDELLEVLERLPPAIADRVLALALGTTLEEVLDDPVLLLDELPPS
FVDVLRGHVPLHYLLDPSQEDALQRIRNQDGPFLVTGPPGSGKTLLGLLAISPLLARARQRGNPQPRALFVTFTRTLART
LERLARVHLSAADRLAVAFKTLDSLVNDLAPDALLADGPAVVALVAQARQRAFTRPLSPDPARDRKLAGSLHRITNLYIQ
EEIEEVILGRGLRTLEEYRAADRTGRQLPLNANQREAIWCVYETLSDLLREQGLFLREERRQLAWETVRQDPAVTRYDVV
VVDEVHDLSLTALRLLHELCRHPEALLLLGDTGQSIYTRTVRWDLLRAEFPGLVSIELSTGHRCPPEIAAAAEAYRAALP
LDDSRGESSAVTHRKRPGRSRPLLVLLSRWDAWPDALARCLAERLRELRLTSGHAAVLVPTNQLADAASEALWARGFEVK
HVRAGQDLSQGSGVKLLTWHNAKGLEFALVLLVLPDWEPPPAGWSDCEVDEVRESIALWRRTVYVAMTRASRALVVLRPQ
HGTSALLEGFPATVWESVTFASESTDAPSDGLPF

Specific function: Unknown

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 74834; Mature: 74834

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENFDDVYRWRVGKYRAFYRIANSRIILMAIEHRRDAYRHDTLPSDDELILIEPDDQFEL
CCCHHHHHHHHHHHHHHHEEECCCEEEEEEEHHHHHHHHCCCCCCCCCEEEECCCCCCCC
PALDDSAPADGDVEPLPAVPMSPPGDPLPRPLAEPELARLGVPADQCGPLAACRTVDELL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCHHHHHHHHHHHH
EVLERLPPAIADRVLALALGTTLEEVLDDPVLLLDELPPSFVDVLRGHVPLHYLLDPSQE
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHCCCHHHHHHHHCCCCEEEEECCCHH
DALQRIRNQDGPFLVTGPPGSGKTLLGLLAISPLLARARQRGNPQPRALFVTFTRTLART
HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
LERLARVHLSAADRLAVAFKTLDSLVNDLAPDALLADGPAVVALVAQARQRAFTRPLSPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCCCCC
PARDRKLAGSLHRITNLYIQEEIEEVILGRGLRTLEEYRAADRTGRQLPLNANQREAIWC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
VYETLSDLLREQGLFLREERRQLAWETVRQDPAVTRYDVVVVDEVHDLSLTALRLLHELC
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHH
RHPEALLLLGDTGQSIYTRTVRWDLLRAEFPGLVSIELSTGHRCPPEIAAAAEAYRAALP
CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
LDDSRGESSAVTHRKRPGRSRPLLVLLSRWDAWPDALARCLAERLRELRLTSGHAAVLVP
CCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
TNQLADAASEALWARGFEVKHVRAGQDLSQGSGVKLLTWHNAKGLEFALVLLVLPDWEPP
CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCC
PAGWSDCEVDEVRESIALWRRTVYVAMTRASRALVVLRPQHGTSALLEGFPATVWESVTF
CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHCCCCHHHHHHHHC
ASESTDAPSDGLPF
CCCCCCCCCCCCCC
>Mature Secondary Structure
MENFDDVYRWRVGKYRAFYRIANSRIILMAIEHRRDAYRHDTLPSDDELILIEPDDQFEL
CCCHHHHHHHHHHHHHHHEEECCCEEEEEEEHHHHHHHHCCCCCCCCCEEEECCCCCCCC
PALDDSAPADGDVEPLPAVPMSPPGDPLPRPLAEPELARLGVPADQCGPLAACRTVDELL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCHHHHHHHHHHHH
EVLERLPPAIADRVLALALGTTLEEVLDDPVLLLDELPPSFVDVLRGHVPLHYLLDPSQE
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEHHCCCHHHHHHHHCCCCEEEEECCCHH
DALQRIRNQDGPFLVTGPPGSGKTLLGLLAISPLLARARQRGNPQPRALFVTFTRTLART
HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
LERLARVHLSAADRLAVAFKTLDSLVNDLAPDALLADGPAVVALVAQARQRAFTRPLSPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCCCCC
PARDRKLAGSLHRITNLYIQEEIEEVILGRGLRTLEEYRAADRTGRQLPLNANQREAIWC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
VYETLSDLLREQGLFLREERRQLAWETVRQDPAVTRYDVVVVDEVHDLSLTALRLLHELC
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHH
RHPEALLLLGDTGQSIYTRTVRWDLLRAEFPGLVSIELSTGHRCPPEIAAAAEAYRAALP
CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
LDDSRGESSAVTHRKRPGRSRPLLVLLSRWDAWPDALARCLAERLRELRLTSGHAAVLVP
CCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
TNQLADAASEALWARGFEVKHVRAGQDLSQGSGVKLLTWHNAKGLEFALVLLVLPDWEPP
CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCC
PAGWSDCEVDEVRESIALWRRTVYVAMTRASRALVVLRPQHGTSALLEGFPATVWESVTF
CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCHHHHCCCCHHHHHHHHC
ASESTDAPSDGLPF
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA