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The map label for this gene is ydhC [H]

Identifier: 221636322

GI number: 221636322

Start: 896992

End: 897783

Strand: Reverse

Name: ydhC [H]

Synonym: trd_A0916

Alternate gene names: 221636322

Gene position: 897783-896992 (Counterclockwise)

Preceding gene: 221636324

Following gene: 221636319

Centisome position: 97.83

GC content: 60.23

Gene sequence:

>792_bases
ATGGTACGTACCGAGTGGGCCCGGAAGGATTCTTGCCCAGAGCTTCTCGCCGGGAACGGCCATGAGGAGCGCGAAACGGT
CGCCGCACAGCGGGCTTACGATTTGTTGGTCGATCGTTTGATCCGCGGCGTTTACCGACCGGGTGACTGGCTCAACGTCC
GTGCCGTTTGTGCCGAGTTAGGCATTTCCCGGACACCAGTGATGGAGGCGATCAAACGGCTCGAACAGGAAGGGTTTCTC
GAGGTCATCCCACGTGCCGGCTGTCGCGTCGCTCAGCCGGGTGTCGACGAGATGCAGCAGATCTTCCGCATGCGTATCGC
CCTGGAAGGTATCGCGGCCGCGGAAGTGGCGGCGAATCCTTCCCCCGAGCGGCTTGCACTCCTCGAGGAACTCGTGCGAG
AGGGCAATCGAGCTGTCGAAGACCAGAACCCGGCACGTTTCGCTGCGGTCAACCTCGCTTTCCATCAAGCGGTTGCCGCC
GCAAGCGGTTCCCGCCGGCTGTTCAGTGTCTTGCAGCATTGTTGGTTGGCAAGCCGCTACTATCTGGCAAGTATCCCATA
TTTTGATAAAAATATGCAGCGCTCGGCTGAGGAGCATGCTTTCATCGTCCAAGCTATCCGTTTCGGCTGGACCGAAGTCG
CCCGTGAGGCGATTGCGGCGCACCTCCAGCGCTGCATCTTTGCCTTCCAGCAATATTTACCGCACTCGCAGGAGCAACCA
GCACCCGCTGTGCCGTCTCCCCTAGGCCATGAGACTATTCCTTGGCTCGGTCGTGTCCACCGCCTCGGATGA

Upstream 100 bases:

>100_bases
GGCATGCAAGAGTAATATACCAGAGTCCGTCGATGACGCCGTGCGCCAGATCGAGTTCGTCGATGTGCTATAGTGAAAGC
AAACGATGGGAGGATTCCCC

Downstream 100 bases:

>100_bases
TTCTCATGCCAGCGCTCAGAAAGGAGACGTCCTGTTCTGCGCGTTGAGCCTCGTCTCGCAGTGCAGGTTGCGTCGCCTAC
CACATCAGGAGTGCTGTTAC

Product: transcriptional regulater GntR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MVRTEWARKDSCPELLAGNGHEERETVAAQRAYDLLVDRLIRGVYRPGDWLNVRAVCAELGISRTPVMEAIKRLEQEGFL
EVIPRAGCRVAQPGVDEMQQIFRMRIALEGIAAAEVAANPSPERLALLEELVREGNRAVEDQNPARFAAVNLAFHQAVAA
ASGSRRLFSVLQHCWLASRYYLASIPYFDKNMQRSAEEHAFIVQAIRFGWTEVAREAIAAHLQRCIFAFQQYLPHSQEQP
APAVPSPLGHETIPWLGRVHRLG

Sequences:

>Translated_263_residues
MVRTEWARKDSCPELLAGNGHEERETVAAQRAYDLLVDRLIRGVYRPGDWLNVRAVCAELGISRTPVMEAIKRLEQEGFL
EVIPRAGCRVAQPGVDEMQQIFRMRIALEGIAAAEVAANPSPERLALLEELVREGNRAVEDQNPARFAAVNLAFHQAVAA
ASGSRRLFSVLQHCWLASRYYLASIPYFDKNMQRSAEEHAFIVQAIRFGWTEVAREAIAAHLQRCIFAFQQYLPHSQEQP
APAVPSPLGHETIPWLGRVHRLG
>Mature_263_residues
MVRTEWARKDSCPELLAGNGHEERETVAAQRAYDLLVDRLIRGVYRPGDWLNVRAVCAELGISRTPVMEAIKRLEQEGFL
EVIPRAGCRVAQPGVDEMQQIFRMRIALEGIAAAEVAANPSPERLALLEELVREGNRAVEDQNPARFAAVNLAFHQAVAA
ASGSRRLFSVLQHCWLASRYYLASIPYFDKNMQRSAEEHAFIVQAIRFGWTEVAREAIAAHLQRCIFAFQQYLPHSQEQP
APAVPSPLGHETIPWLGRVHRLG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=222, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 29542; Mature: 29542

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRTEWARKDSCPELLAGNGHEERETVAAQRAYDLLVDRLIRGVYRPGDWLNVRAVCAEL
CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GISRTPVMEAIKRLEQEGFLEVIPRAGCRVAQPGVDEMQQIFRMRIALEGIAAAEVAANP
CCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SPERLALLEELVREGNRAVEDQNPARFAAVNLAFHQAVAAASGSRRLFSVLQHCWLASRY
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YLASIPYFDKNMQRSAEEHAFIVQAIRFGWTEVAREAIAAHLQRCIFAFQQYLPHSQEQP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
APAVPSPLGHETIPWLGRVHRLG
CCCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MVRTEWARKDSCPELLAGNGHEERETVAAQRAYDLLVDRLIRGVYRPGDWLNVRAVCAEL
CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GISRTPVMEAIKRLEQEGFLEVIPRAGCRVAQPGVDEMQQIFRMRIALEGIAAAEVAANP
CCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SPERLALLEELVREGNRAVEDQNPARFAAVNLAFHQAVAAASGSRRLFSVLQHCWLASRY
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YLASIPYFDKNMQRSAEEHAFIVQAIRFGWTEVAREAIAAHLQRCIFAFQQYLPHSQEQP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
APAVPSPLGHETIPWLGRVHRLG
CCCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]