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The map label for this gene is rbsC [H]

Identifier: 221636178

GI number: 221636178

Start: 752236

End: 753243

Strand: Reverse

Name: rbsC [H]

Synonym: trd_A0772

Alternate gene names: 221636178

Gene position: 753243-752236 (Counterclockwise)

Preceding gene: 221636179

Following gene: 221636177

Centisome position: 82.08

GC content: 60.81

Gene sequence:

>1008_bases
GTGTCGACGCCGCGTGAAGTCGCGACCGGACGCTATGTCGCTCTCGGACGTCTCCGCTGGGTGCGAGGGGTCATCGATCA
ACTGGGGCTGCTCCCGGTTTTGCTGATCGGCCTCTTGCTCTTCTTTTCCATCGCTTCGCCGAACTTCTTTACGCGTACGA
ACCTCTCGACCATCTTGACACAGGCGCTTTTCTTGATCATCGTATCGGTTGCCCAGACATTGGTGCTCCTGACTGGTGGC
TTCGATCTTTCGATGGGCTCCTCGATCGCACTGGTCAGTATCGTGGTCGGCCTGCAGCTCCTGGATCACCCGGACGCACC
ACTGACTGGTCTGGTGATCGCGACCCTGGCAGCGATCGCGGTGGCGACCGGTATCGGTGCGCTCAATGGACTGTTCGTCT
CGGTGTTTCGCGTGCCGCCGTTCATCGTGACCCTGGCCATGATGACGGCGGTGTCCGGTGTGGCTCTGAAAGTTTCTCGC
GGAGTACCAGTGTTCGGCTTGCCCGGTTATTTCTCCAGCACCCTCTATACCGGTAAAGTGTTGGGCATTCCCGTTCCCTG
GTTCGTCATGGTGCTCGTCCTCTTGGTCATGTATCTCCTGCTGCACTGGACGCGCTTTGGGCGGTACTGGTACGCGATCG
GAAGCAATGCGGAGGCGGCGCGCCTCTCGGGCATCGCGGTCCGTTTCTATCTCTTCCTCGCCTATGCGATCGCTGGGGTC
CTGGTGGGGGTGACTGGTCTCTTGCTGACGGCACGGGTGGGGTCGGGTGAGCCGACCTTGGGGGCGAGCTTCCCGTTGGA
ATCGATCGCAGCGGCGGTGCTCGGTGGAGTCTCGATCCGCGGTGGCGAGGGGAATATCTTCGGTGCGGCGCTGGGTGCCG
TTTTCCTGGTCATGCTGCGCAATGGTATGGACATCATGGGGATCAGCACCTACACGCAGTTGATCATCACGGGCGCGCTG
CTGGTCGTGGCAGTGATCATCGATAACTGGGTGCATCGTGAGCGGTAG

Upstream 100 bases:

>100_bases
CAGGGGGAACTCGTGGCGATCATGCGCCACGAGGAAGTGTCCGAGGAACGCTTGTTGCAGTACTACTTCGGGCACACAAG
AGAGGAGGTCGGGCGGACCG

Downstream 100 bases:

>100_bases
GACGGGAAGGGGGAACGTGATGGCGGAGCACACGATCAAATCACCGTTGCCAGGCATCTTTTATCGGCGACCCAGCCCGG
ATGCGGCGCCGTTCGTCGAG

Product: ribose transport system permease protein RbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSTPREVATGRYVALGRLRWVRGVIDQLGLLPVLLIGLLLFFSIASPNFFTRTNLSTILTQALFLIIVSVAQTLVLLTGG
FDLSMGSSIALVSIVVGLQLLDHPDAPLTGLVIATLAAIAVATGIGALNGLFVSVFRVPPFIVTLAMMTAVSGVALKVSR
GVPVFGLPGYFSSTLYTGKVLGIPVPWFVMVLVLLVMYLLLHWTRFGRYWYAIGSNAEAARLSGIAVRFYLFLAYAIAGV
LVGVTGLLLTARVGSGEPTLGASFPLESIAAAVLGGVSIRGGEGNIFGAALGAVFLVMLRNGMDIMGISTYTQLIITGAL
LVVAVIIDNWVHRER

Sequences:

>Translated_335_residues
MSTPREVATGRYVALGRLRWVRGVIDQLGLLPVLLIGLLLFFSIASPNFFTRTNLSTILTQALFLIIVSVAQTLVLLTGG
FDLSMGSSIALVSIVVGLQLLDHPDAPLTGLVIATLAAIAVATGIGALNGLFVSVFRVPPFIVTLAMMTAVSGVALKVSR
GVPVFGLPGYFSSTLYTGKVLGIPVPWFVMVLVLLVMYLLLHWTRFGRYWYAIGSNAEAARLSGIAVRFYLFLAYAIAGV
LVGVTGLLLTARVGSGEPTLGASFPLESIAAAVLGGVSIRGGEGNIFGAALGAVFLVMLRNGMDIMGISTYTQLIITGAL
LVVAVIIDNWVHRER
>Mature_334_residues
STPREVATGRYVALGRLRWVRGVIDQLGLLPVLLIGLLLFFSIASPNFFTRTNLSTILTQALFLIIVSVAQTLVLLTGGF
DLSMGSSIALVSIVVGLQLLDHPDAPLTGLVIATLAAIAVATGIGALNGLFVSVFRVPPFIVTLAMMTAVSGVALKVSRG
VPVFGLPGYFSSTLYTGKVLGIPVPWFVMVLVLLVMYLLLHWTRFGRYWYAIGSNAEAARLSGIAVRFYLFLAYAIAGVL
VGVTGLLLTARVGSGEPTLGASFPLESIAAAVLGGVSIRGGEGNIFGAALGAVFLVMLRNGMDIMGISTYTQLIITGALL
VVAVIIDNWVHRER

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=324, Percent_Identity=37.962962962963, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1790524, Length=308, Percent_Identity=31.8181818181818, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=34.1614906832298, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=32.0512820512821, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789992, Length=131, Percent_Identity=45.8015267175573, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787794, Length=318, Percent_Identity=32.0754716981132, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788471, Length=322, Percent_Identity=31.9875776397516, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082395, Length=297, Percent_Identity=29.2929292929293, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787793, Length=288, Percent_Identity=28.8194444444444, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693214, Length=252, Percent_Identity=29.3650793650794, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35380; Mature: 35249

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPREVATGRYVALGRLRWVRGVIDQLGLLPVLLIGLLLFFSIASPNFFTRTNLSTILT
CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHH
QALFLIIVSVAQTLVLLTGGFDLSMGSSIALVSIVVGLQLLDHPDAPLTGLVIATLAAIA
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VATGIGALNGLFVSVFRVPPFIVTLAMMTAVSGVALKVSRGVPVFGLPGYFSSTLYTGKV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCEEECCCHHHHHHHCCEE
LGIPVPWFVMVLVLLVMYLLLHWTRFGRYWYAIGSNAEAARLSGIAVRFYLFLAYAIAGV
ECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
LVGVTGLLLTARVGSGEPTLGASFPLESIAAAVLGGVSIRGGEGNIFGAALGAVFLVMLR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHH
NGMDIMGISTYTQLIITGALLVVAVIIDNWVHRER
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STPREVATGRYVALGRLRWVRGVIDQLGLLPVLLIGLLLFFSIASPNFFTRTNLSTILT
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHH
QALFLIIVSVAQTLVLLTGGFDLSMGSSIALVSIVVGLQLLDHPDAPLTGLVIATLAAIA
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VATGIGALNGLFVSVFRVPPFIVTLAMMTAVSGVALKVSRGVPVFGLPGYFSSTLYTGKV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCEEECCCHHHHHHHCCEE
LGIPVPWFVMVLVLLVMYLLLHWTRFGRYWYAIGSNAEAARLSGIAVRFYLFLAYAIAGV
ECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
LVGVTGLLLTARVGSGEPTLGASFPLESIAAAVLGGVSIRGGEGNIFGAALGAVFLVMLR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHH
NGMDIMGISTYTQLIITGALLVVAVIIDNWVHRER
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]