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The map label for this gene is yjbJ [H]

Identifier: 221636052

GI number: 221636052

Start: 638000

End: 638983

Strand: Reverse

Name: yjbJ [H]

Synonym: trd_A0646

Alternate gene names: 221636052

Gene position: 638983-638000 (Counterclockwise)

Preceding gene: 221636053

Following gene: 221636051

Centisome position: 69.63

GC content: 68.39

Gene sequence:

>984_bases
GTGGCGGGTCTCACGATTCCACCCGAGATCATCGCGAGCATGCCGGTCCGCTTCGGTATCCGGTCACCGCAGCTGGGTGG
CTCGACCGGAGCGAGCAGTCAGTTTTGGGCGCTCCTGGCTCAGCGTGGCGTCGTCCCCGCTGCACCGCCTGCAAACAGTG
ATCCACTGGCGATGTTGCGCGGTGCCTGGCCGGTGAGCGGCACGGTGACTTCGACCTACGGACCGCGGTCGCTGCTTCCG
GGTGAGACGTTCCATTCGGGGATCGATATCGCGGTTCCCGAGGGGACGCCAGTGTGCGCGACGGGCGACGGCACCGTGCG
CTTCGTCGGGAACACGGACGGGTATGGGTTGCGGATCGAAGTGGATCACGGGAACGGCGTGACGACACTGTACGGGCATC
TCAGTGCGGCTGACGTGCGGCCCGGGCAGCGGGTGCAGCGGGGGCAGGTGATCGGCAAGTCCGGCAATACCGGTCTCTCG
ACCGGGCCACACCTGCACTACGAGATCCGGCAGAACGGGCGTGCGGTCGACCCCGGGCCGTTGCTGCGTGCTGCGCCGAA
AGGATCGGCACAGGGGATCGAGCGGATCTCGGCTCTTCCCTATGGTCGGGCGATCCTCCAGGCAGCGCAGCGGTACGGGT
TGGATCCTGCTCTGCTGGCGGCGATGGTCAAGGTCGAGAGCGGTTTCGATCCACGGGCCGTTTCGCCAGCGGGAGCGAAG
GGACTGCTGCAGCTGATGGACACGACGGCGGCGGCACTCGGCGTGCGCGATCCCTTCGACCCGACGCAAAACCTGGACGG
CGGCGCCCGCTACTTCAGCCAGCTCTTGCAGCGGTTCGGCGGCGATGTCTCGCTTGCGCTGGCCGCGTACAACGCAGGCC
CGGGCGCAGTCGAGCAGGCAGGTGGGGTCCCGCCGTACCCGGAGACGCACCGGTACGTCAGCGCGGTGCTCGCGACCTGG
CGCGCGCTGGGCGGAACAGGATGA

Upstream 100 bases:

>100_bases
CGGGAGCAGGCCGCCGAAACGGCGCTCCTGGACGAACTGGCGACCGTGCGCGCTGCCCGGCGCCTGCTGACCGACCAATG
AAGCGCGTGAGGAGCGGGTT

Downstream 100 bases:

>100_bases
GAGGTGCACGATGGCCGGAACGATCGATCCGATCGGTGTGCTTGCGCGGACGCTCGATGCGCTCGCCTTGCGTCAGCAGG
TGACGGCGAGCAATGTCGCC

Product: lytic transglycosylase, catalytic

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MAGLTIPPEIIASMPVRFGIRSPQLGGSTGASSQFWALLAQRGVVPAAPPANSDPLAMLRGAWPVSGTVTSTYGPRSLLP
GETFHSGIDIAVPEGTPVCATGDGTVRFVGNTDGYGLRIEVDHGNGVTTLYGHLSAADVRPGQRVQRGQVIGKSGNTGLS
TGPHLHYEIRQNGRAVDPGPLLRAAPKGSAQGIERISALPYGRAILQAAQRYGLDPALLAAMVKVESGFDPRAVSPAGAK
GLLQLMDTTAAALGVRDPFDPTQNLDGGARYFSQLLQRFGGDVSLALAAYNAGPGAVEQAGGVPPYPETHRYVSAVLATW
RALGGTG

Sequences:

>Translated_327_residues
MAGLTIPPEIIASMPVRFGIRSPQLGGSTGASSQFWALLAQRGVVPAAPPANSDPLAMLRGAWPVSGTVTSTYGPRSLLP
GETFHSGIDIAVPEGTPVCATGDGTVRFVGNTDGYGLRIEVDHGNGVTTLYGHLSAADVRPGQRVQRGQVIGKSGNTGLS
TGPHLHYEIRQNGRAVDPGPLLRAAPKGSAQGIERISALPYGRAILQAAQRYGLDPALLAAMVKVESGFDPRAVSPAGAK
GLLQLMDTTAAALGVRDPFDPTQNLDGGARYFSQLLQRFGGDVSLALAAYNAGPGAVEQAGGVPPYPETHRYVSAVLATW
RALGGTG
>Mature_326_residues
AGLTIPPEIIASMPVRFGIRSPQLGGSTGASSQFWALLAQRGVVPAAPPANSDPLAMLRGAWPVSGTVTSTYGPRSLLPG
ETFHSGIDIAVPEGTPVCATGDGTVRFVGNTDGYGLRIEVDHGNGVTTLYGHLSAADVRPGQRVQRGQVIGKSGNTGLST
GPHLHYEIRQNGRAVDPGPLLRAAPKGSAQGIERISALPYGRAILQAAQRYGLDPALLAAMVKVESGFDPRAVSPAGAKG
LLQLMDTTAAALGVRDPFDPTQNLDGGARYFSQLLQRFGGDVSLALAAYNAGPGAVEQAGGVPPYPETHRYVSAVLATWR
ALGGTG

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=113, Percent_Identity=46.0176991150442, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=41.6666666666667, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789099, Length=126, Percent_Identity=38.8888888888889, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082174, Length=133, Percent_Identity=35.3383458646617, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33735; Mature: 33603

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLTIPPEIIASMPVRFGIRSPQLGGSTGASSQFWALLAQRGVVPAAPPANSDPLAMLR
CCCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHEE
GAWPVSGTVTSTYGPRSLLPGETFHSGIDIAVPEGTPVCATGDGTVRFVGNTDGYGLRIE
CCCCCCCEEECCCCCCCCCCCCHHHCCCEEEECCCCCEEECCCCEEEEEECCCCEEEEEE
VDHGNGVTTLYGHLSAADVRPGQRVQRGQVIGKSGNTGLSTGPHLHYEIRQNGRAVDPGP
EECCCCEEEEEECCCCCCCCCCCHHHHCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
LLRAAPKGSAQGIERISALPYGRAILQAAQRYGLDPALLAAMVKVESGFDPRAVSPAGAK
CEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHH
GLLQLMDTTAAALGVRDPFDPTQNLDGGARYFSQLLQRFGGDVSLALAAYNAGPGAVEQA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHC
GGVPPYPETHRYVSAVLATWRALGGTG
CCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AGLTIPPEIIASMPVRFGIRSPQLGGSTGASSQFWALLAQRGVVPAAPPANSDPLAMLR
CCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHEE
GAWPVSGTVTSTYGPRSLLPGETFHSGIDIAVPEGTPVCATGDGTVRFVGNTDGYGLRIE
CCCCCCCEEECCCCCCCCCCCCHHHCCCEEEECCCCCEEECCCCEEEEEECCCCEEEEEE
VDHGNGVTTLYGHLSAADVRPGQRVQRGQVIGKSGNTGLSTGPHLHYEIRQNGRAVDPGP
EECCCCEEEEEECCCCCCCCCCCHHHHCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCC
LLRAAPKGSAQGIERISALPYGRAILQAAQRYGLDPALLAAMVKVESGFDPRAVSPAGAK
CEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHH
GLLQLMDTTAAALGVRDPFDPTQNLDGGARYFSQLLQRFGGDVSLALAAYNAGPGAVEQA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHC
GGVPPYPETHRYVSAVLATWRALGGTG
CCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]