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The map label for this gene is pmpB [H]

Identifier: 221636047

GI number: 221636047

Start: 631523

End: 634222

Strand: Reverse

Name: pmpB [H]

Synonym: trd_A0641

Alternate gene names: 221636047

Gene position: 634222-631523 (Counterclockwise)

Preceding gene: 221636048

Following gene: 221636046

Centisome position: 69.11

GC content: 69.63

Gene sequence:

>2700_bases
GTGCGCTGGACAGGTGGGGTGGTCGCGCTGCTGGTGGGTTCGCTGGCGCTGGCGGCAGCTGGTGGCGCATTGGTCTTCGT
GCCGGCGACCGGTGCGGCCGAGGTGACGATCACCGTTGCCGGAACGAGCGACGGGACGGGCAGCTGCAGCGGCAGCGGGA
CGACGCGCACCTGCCCGACGTTGCGGGCTGCAGTCATCCTGGCGAATGCCCTGAACGACCCGGTCACCATCCAGCTCCAG
GACGGACGCTATGAACTGTCCATCCCGCCTGCGACGGATGACACGGCCGAGAGTGGAGATCTCGACGTGACCAAGCGTGG
CGGTGCTCTGCGCATCGTCGGGCGGAACGCGACAACCATCGCTGGAGCCTGGCCAGATGAGAACCAGGCCGACCGGTTGT
TCGACGTCGGCGCGGGCGCGACTATGATCCTGGAGAAGCTCACACTCAGCGGAGGACGGGCGGTCCACGACGATGCCCGC
GACCACAAGGGGGGCGCGATCTGGGTGGGTGGGGCGCTCCAGCTGGCTGACGTCACGTTTCAGGAAAACGTGGCTGCCGG
CGACGGCGGAGCTGTGTACGTCGCGCCGTCCGGAACCTTGTCCGTGCTGCTCGACAGGAGGGTCGCGTTCGCGCGCAATC
GCGCCGGTGATCCGATGAATGACGACGAAGAAGCCAACGGCGGTGCGCTGGCGGTCGCGGGTGCAGCGGTGCTGGACGGG
GTAGCCGTGCTGCACGGCAACGAGGCGAGCGGTGCGGGCGGCGCCGTGTGGGTCTCCGGTGGACGCCTGGTGCTGGGGAG
CCGCGTCACGCTGGGGGGCGGCGCGGCGAGCGATGCCAACCGCGCCCGCGACGGCGGTGCGCTGGCGGTCGACGGCGGCC
AGGTCGAACTCCAGGGGACGCTGGTCCGCGGCAATCGGGCAGGAAACGGGACGCCAGCCGACGAGAGCGGTCGGGGAGGC
GGGATCTGGGTCGCGCGTGGGCAGGTGACGCTGCGTCAGGTGAAGGTCCTAGCCAACCGGGCAGTGCGCGGCGGGGGAAT
CGCGTCCGACGAGGGGATCTTGACGCTGTTGGACAGCGAAGTGCGTGAGAATCAGGCCGAGCTCAGCGGGGGAGGCATCG
CTCTCCTCGGGAAGGGGACGGCACAGATCGTCGGTGGAACGATCGGTACCAATACGGCTGTGGAGGGGGATGGAGGCGGG
GTCCTCAACGCGGGAACGCTGGCGCTCTCGCGCACGGTGGTCGAAGGCAACCGAGCCGAGGCTGGCGCAGGTGGCGGGAT
CTCGAGCAGCGGGACGCTCGATCTGAGTTCACCCGAAACGGTGATCGTGCGCGACAACCGTGCCCGGCTGGGAGGCGGTC
TGGCGAGCACCGGAACCAGCCGCTTGCGCAGTCTGGTGGTGCAGAGCAACGTGGCAACCCAGGACGGCGGAGGGATCTGG
AACCAGGGAGACATGGTTCTCGATGCCGCGACGATCGAGGCAAACCGGTCCGAAGCAGCTGGTGGTGGTATCTACCATGC
CGGCAGCAAGACGCTGACGCTGCAGGGGAACACGATCGTGCGCGGTAACCAGGCGACGCTCGACGGCGGTGGAATCGCCG
CACTGGGCAAGGCGAGCCTGAACGGCGCAACGGTGGTCGGGAACGTGGCTGGTGGGTCGGGTGGGGGACTGGCGGCGCGA
GGCCAGGTCGATCTCCAGCGCGTGCAGGTGATCGACAACCAGGCCACGAACGACGGTGGCGGGCTCGTGGTGGAAGGAAC
CGCCAAGGTGACGATGGCGGACACCGCGATTCGGCGCAGCAGCGCGGGACAGCTGGGCGGCGGAGTCGCCGTGCGGTCCG
GTGGGCAGCTCACCATCACTGCGAGCTCGGTCACCGAGAACCAGAGTGCCGCCTATGGCGGTGGAATAGCCGTGCTGGGG
GCGGTGGGGCTGGCCAACGTGACGGTGAGCACCAACGTGAGCCAGCAGCGGGGCGGGGGCCTCTGGGTGGGACCGCAGGG
GACGGCGAGTCTGCAATTCGTGACCCTGGCCGCGAACGCGGCCGCCGCGGGCGGCGCGCTCTACAACGATGGAGGTGGGG
TCACGCTGCGCGGGACGCTGCTCGCGGCCAGCCCGGGCGGCGGCAATTGCGGTGGACTGGCACCGAGTTCCCAGGGTGGC
AACCTGGAGGATCGCGATAGCTGTGGTCTGCAGGGTACCGGAGACCTGGTCGATGGGGATCCCAGTTTGCAGCCTCTCCA
AGTGGACTCGTCGGGCGGCACGCTCTACCATGCGCTCGGCCTAGGTTCGGCTGCCATCGATGCAGCTGGGACGCAGGGAT
GCCCGAGCGAGGACCAGGTGCATACCAAGCGGCCGCAAGGTTCGGCCTGCGATATCGGAGCCTGGGAGTTGCCGGTTCTG
GAGGCGACGCCGCTCCCGACAGCCAGCCCGACCGGTACGCCAGTTGGTACGCCCGGCGCAGGACTACGGCCGACGACCAC
ACCGACTGCACGACCGGTGCTCGGTCCGGCGACGCCGATCACCGGTCCTGGCCCGACGCCGACTCCGACGATCGGGCTGC
CGGCGACCGGGTCGGCCAGCGCGAGCCCGGTGGCCCGAACGGTGGGAGTGGGCTTGCTCGCCCTGGGGGTCGCCGGGATG
ATGGCCGGTGGTGTGGGGATGATGCGAGGGCGGCGAAGCAATGGTGCGCGCGAGAGGTAG

Upstream 100 bases:

>100_bases
AACCTGCGGCGCTGATGTTGGGGCAGCCGGGCGCGAGCGACGTGCGTCTGTTCGGGGCAGGCGCCTCTGGTGATGCGTCG
CGGGACGGGAGGTCGGTTCG

Downstream 100 bases:

>100_bases
TCGATGCGCTCGGCGGGGCTGCTCCTGCTTCTCGCTGCGGCGGCGTGGATCCTCGGTGCCGGGATCGGCCTCCTGGCTGG
AACGTCGTTGCGCGACGATC

Product: hypothetical protein

Products: NA

Alternate protein names: Polymorphic membrane protein B [H]

Number of amino acids: Translated: 899; Mature: 899

Protein sequence:

>899_residues
MRWTGGVVALLVGSLALAAAGGALVFVPATGAAEVTITVAGTSDGTGSCSGSGTTRTCPTLRAAVILANALNDPVTIQLQ
DGRYELSIPPATDDTAESGDLDVTKRGGALRIVGRNATTIAGAWPDENQADRLFDVGAGATMILEKLTLSGGRAVHDDAR
DHKGGAIWVGGALQLADVTFQENVAAGDGGAVYVAPSGTLSVLLDRRVAFARNRAGDPMNDDEEANGGALAVAGAAVLDG
VAVLHGNEASGAGGAVWVSGGRLVLGSRVTLGGGAASDANRARDGGALAVDGGQVELQGTLVRGNRAGNGTPADESGRGG
GIWVARGQVTLRQVKVLANRAVRGGGIASDEGILTLLDSEVRENQAELSGGGIALLGKGTAQIVGGTIGTNTAVEGDGGG
VLNAGTLALSRTVVEGNRAEAGAGGGISSSGTLDLSSPETVIVRDNRARLGGGLASTGTSRLRSLVVQSNVATQDGGGIW
NQGDMVLDAATIEANRSEAAGGGIYHAGSKTLTLQGNTIVRGNQATLDGGGIAALGKASLNGATVVGNVAGGSGGGLAAR
GQVDLQRVQVIDNQATNDGGGLVVEGTAKVTMADTAIRRSSAGQLGGGVAVRSGGQLTITASSVTENQSAAYGGGIAVLG
AVGLANVTVSTNVSQQRGGGLWVGPQGTASLQFVTLAANAAAAGGALYNDGGGVTLRGTLLAASPGGGNCGGLAPSSQGG
NLEDRDSCGLQGTGDLVDGDPSLQPLQVDSSGGTLYHALGLGSAAIDAAGTQGCPSEDQVHTKRPQGSACDIGAWELPVL
EATPLPTASPTGTPVGTPGAGLRPTTTPTARPVLGPATPITGPGPTPTPTIGLPATGSASASPVARTVGVGLLALGVAGM
MAGGVGMMRGRRSNGARER

Sequences:

>Translated_899_residues
MRWTGGVVALLVGSLALAAAGGALVFVPATGAAEVTITVAGTSDGTGSCSGSGTTRTCPTLRAAVILANALNDPVTIQLQ
DGRYELSIPPATDDTAESGDLDVTKRGGALRIVGRNATTIAGAWPDENQADRLFDVGAGATMILEKLTLSGGRAVHDDAR
DHKGGAIWVGGALQLADVTFQENVAAGDGGAVYVAPSGTLSVLLDRRVAFARNRAGDPMNDDEEANGGALAVAGAAVLDG
VAVLHGNEASGAGGAVWVSGGRLVLGSRVTLGGGAASDANRARDGGALAVDGGQVELQGTLVRGNRAGNGTPADESGRGG
GIWVARGQVTLRQVKVLANRAVRGGGIASDEGILTLLDSEVRENQAELSGGGIALLGKGTAQIVGGTIGTNTAVEGDGGG
VLNAGTLALSRTVVEGNRAEAGAGGGISSSGTLDLSSPETVIVRDNRARLGGGLASTGTSRLRSLVVQSNVATQDGGGIW
NQGDMVLDAATIEANRSEAAGGGIYHAGSKTLTLQGNTIVRGNQATLDGGGIAALGKASLNGATVVGNVAGGSGGGLAAR
GQVDLQRVQVIDNQATNDGGGLVVEGTAKVTMADTAIRRSSAGQLGGGVAVRSGGQLTITASSVTENQSAAYGGGIAVLG
AVGLANVTVSTNVSQQRGGGLWVGPQGTASLQFVTLAANAAAAGGALYNDGGGVTLRGTLLAASPGGGNCGGLAPSSQGG
NLEDRDSCGLQGTGDLVDGDPSLQPLQVDSSGGTLYHALGLGSAAIDAAGTQGCPSEDQVHTKRPQGSACDIGAWELPVL
EATPLPTASPTGTPVGTPGAGLRPTTTPTARPVLGPATPITGPGPTPTPTIGLPATGSASASPVARTVGVGLLALGVAGM
MAGGVGMMRGRRSNGARER
>Mature_899_residues
MRWTGGVVALLVGSLALAAAGGALVFVPATGAAEVTITVAGTSDGTGSCSGSGTTRTCPTLRAAVILANALNDPVTIQLQ
DGRYELSIPPATDDTAESGDLDVTKRGGALRIVGRNATTIAGAWPDENQADRLFDVGAGATMILEKLTLSGGRAVHDDAR
DHKGGAIWVGGALQLADVTFQENVAAGDGGAVYVAPSGTLSVLLDRRVAFARNRAGDPMNDDEEANGGALAVAGAAVLDG
VAVLHGNEASGAGGAVWVSGGRLVLGSRVTLGGGAASDANRARDGGALAVDGGQVELQGTLVRGNRAGNGTPADESGRGG
GIWVARGQVTLRQVKVLANRAVRGGGIASDEGILTLLDSEVRENQAELSGGGIALLGKGTAQIVGGTIGTNTAVEGDGGG
VLNAGTLALSRTVVEGNRAEAGAGGGISSSGTLDLSSPETVIVRDNRARLGGGLASTGTSRLRSLVVQSNVATQDGGGIW
NQGDMVLDAATIEANRSEAAGGGIYHAGSKTLTLQGNTIVRGNQATLDGGGIAALGKASLNGATVVGNVAGGSGGGLAAR
GQVDLQRVQVIDNQATNDGGGLVVEGTAKVTMADTAIRRSSAGQLGGGVAVRSGGQLTITASSVTENQSAAYGGGIAVLG
AVGLANVTVSTNVSQQRGGGLWVGPQGTASLQFVTLAANAAAAGGALYNDGGGVTLRGTLLAASPGGGNCGGLAPSSQGG
NLEDRDSCGLQGTGDLVDGDPSLQPLQVDSSGGTLYHALGLGSAAIDAAGTQGCPSEDQVHTKRPQGSACDIGAWELPVL
EATPLPTASPTGTPVGTPGAGLRPTTTPTARPVLGPATPITGPGPTPTPTIGLPATGSASASPVARTVGVGLLALGVAGM
MAGGVGMMRGRRSNGARER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR006626
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 87686; Mature: 87686

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWTGGVVALLVGSLALAAAGGALVFVPATGAAEVTITVAGTSDGTGSCSGSGTTRTCPT
CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCHH
LRAAVILANALNDPVTIQLQDGRYELSIPPATDDTAESGDLDVTKRGGALRIVGRNATTI
HHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCEEE
AGAWPDENQADRLFDVGAGATMILEKLTLSGGRAVHDDARDHKGGAIWVGGALQLADVTF
EECCCCCCCCCCEEECCCCHHHHHHHHHCCCCCEECCCCCCCCCCEEEECCEEEEEEEEE
QENVAAGDGGAVYVAPSGTLSVLLDRRVAFARNRAGDPMNDDEEANGGALAVAGAAVLDG
CCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHCC
VAVLHGNEASGAGGAVWVSGGRLVLGSRVTLGGGAASDANRARDGGALAVDGGQVELQGT
EEEEECCCCCCCCCEEEEECCEEEEECEEEECCCCCCCCCCCCCCCEEEECCCEEEEEEE
LVRGNRAGNGTPADESGRGGGIWVARGQVTLRQVKVLANRAVRGGGIASDEGILTLLDSE
EEECCCCCCCCCCCCCCCCCEEEEEECCEEHHHHHHHHHHHHCCCCCCCCCCEEEEECCH
VRENQAELSGGGIALLGKGTAQIVGGTIGTNTAVEGDGGGVLNAGTLALSRTVVEGNRAE
HHHHHHHCCCCCEEEEECCCEEEECCCCCCCCEEECCCCCEEECCCEEEEEEEECCCCCC
AGAGGGISSSGTLDLSSPETVIVRDNRARLGGGLASTGTSRLRSLVVQSNVATQDGGGIW
CCCCCCCCCCCEEECCCCCEEEEECCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
NQGDMVLDAATIEANRSEAAGGGIYHAGSKTLTLQGNTIVRGNQATLDGGGIAALGKASL
CCCCEEEEEEEEECCCCCCCCCCEEECCCEEEEEECCEEEECCCEEECCCCEEEECCCCC
NGATVVGNVAGGSGGGLAARGQVDLQRVQVIDNQATNDGGGLVVEGTAKVTMADTAIRRS
CCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEEHHHHHHC
SAGQLGGGVAVRSGGQLTITASSVTENQSAAYGGGIAVLGAVGLANVTVSTNVSQQRGGG
CCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEHHCEEEEEEECCCCHHCCCE
LWVGPQGTASLQFVTLAANAAAAGGALYNDGGGVTLRGTLLAASPGGGNCGGLAPSSQGG
EEECCCCCCEEEEEEEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
NLEDRDSCGLQGTGDLVDGDPSLQPLQVDSSGGTLYHALGLGSAAIDAAGTQGCPSEDQV
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCHHCCCCCCCCCCCCCCC
HTKRPQGSACDIGAWELPVLEATPLPTASPTGTPVGTPGAGLRPTTTPTARPVLGPATPI
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGPGPTPTPTIGLPATGSASASPVARTVGVGLLALGVAGMMAGGVGMMRGRRSNGARER
CCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRWTGGVVALLVGSLALAAAGGALVFVPATGAAEVTITVAGTSDGTGSCSGSGTTRTCPT
CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCHH
LRAAVILANALNDPVTIQLQDGRYELSIPPATDDTAESGDLDVTKRGGALRIVGRNATTI
HHHHHHHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCEEE
AGAWPDENQADRLFDVGAGATMILEKLTLSGGRAVHDDARDHKGGAIWVGGALQLADVTF
EECCCCCCCCCCEEECCCCHHHHHHHHHCCCCCEECCCCCCCCCCEEEECCEEEEEEEEE
QENVAAGDGGAVYVAPSGTLSVLLDRRVAFARNRAGDPMNDDEEANGGALAVAGAAVLDG
CCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECHHHHCC
VAVLHGNEASGAGGAVWVSGGRLVLGSRVTLGGGAASDANRARDGGALAVDGGQVELQGT
EEEEECCCCCCCCCEEEEECCEEEEECEEEECCCCCCCCCCCCCCCEEEECCCEEEEEEE
LVRGNRAGNGTPADESGRGGGIWVARGQVTLRQVKVLANRAVRGGGIASDEGILTLLDSE
EEECCCCCCCCCCCCCCCCCEEEEEECCEEHHHHHHHHHHHHCCCCCCCCCCEEEEECCH
VRENQAELSGGGIALLGKGTAQIVGGTIGTNTAVEGDGGGVLNAGTLALSRTVVEGNRAE
HHHHHHHCCCCCEEEEECCCEEEECCCCCCCCEEECCCCCEEECCCEEEEEEEECCCCCC
AGAGGGISSSGTLDLSSPETVIVRDNRARLGGGLASTGTSRLRSLVVQSNVATQDGGGIW
CCCCCCCCCCCEEECCCCCEEEEECCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
NQGDMVLDAATIEANRSEAAGGGIYHAGSKTLTLQGNTIVRGNQATLDGGGIAALGKASL
CCCCEEEEEEEEECCCCCCCCCCEEECCCEEEEEECCEEEECCCEEECCCCEEEECCCCC
NGATVVGNVAGGSGGGLAARGQVDLQRVQVIDNQATNDGGGLVVEGTAKVTMADTAIRRS
CCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEEHHHHHHC
SAGQLGGGVAVRSGGQLTITASSVTENQSAAYGGGIAVLGAVGLANVTVSTNVSQQRGGG
CCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEHHCEEEEEEECCCCHHCCCE
LWVGPQGTASLQFVTLAANAAAAGGALYNDGGGVTLRGTLLAASPGGGNCGGLAPSSQGG
EEECCCCCCEEEEEEEEECCCCCCCCEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
NLEDRDSCGLQGTGDLVDGDPSLQPLQVDSSGGTLYHALGLGSAAIDAAGTQGCPSEDQV
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCHHCCCCCCCCCCCCCCC
HTKRPQGSACDIGAWELPVLEATPLPTASPTGTPVGTPGAGLRPTTTPTARPVLGPATPI
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGPGPTPTPTIGLPATGSASASPVARTVGVGLLALGVAGMMAGGVGMMRGRRSNGARER
CCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10684935 [H]