| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is pqqL [C]
Identifier: 221635967
GI number: 221635967
Start: 549775
End: 552438
Strand: Reverse
Name: pqqL [C]
Synonym: trd_A0561
Alternate gene names: 221635967
Gene position: 552438-549775 (Counterclockwise)
Preceding gene: 221635968
Following gene: 221635966
Centisome position: 60.2
GC content: 65.5
Gene sequence:
>2664_bases ATGCACGATGATGGCGCATTCATCGCGACACGCTTGACGAATGGCCTCGAGGTTCTCCTACAGCCACTCCGGCATGCACC GGTCGTCTCCTGTTGGATTTGGTACCGGGTAGGAAGTCGGAACGAGCAACCAGGTCTCACGGGGATTTCCCACTGGGTCG AGCACATGCTCTTCAAGGGAACACCGCGTTTCCCGCCCGGTACGATCTTCCGTCAGGTCAATCGCTGGGGTGGCACCCTC AACGGTTTCACCTGGCTGGACTACACCGCTTATTTCGAGACGCTGCCCACGCCCGGCTGGCAACTCGCGCTGGACATCGA GGCCGATCGCATGGTAGCGGCCGCGTTCGACCCCGGGGAAGTGGAGCGGGAGCGTACCGTCATCCTCGCCGAGCGCGCCG GCAGCGAGAACCAGCCCAGCACGTACCTCCGCGAAGAAGTCCTGGCGGCTTCCTTTCGGGCCCATCCGTATGGGCATCCG GTGATCGGCTATCGAGAGGACCTGCAGACCATCACGCGCGACGACTTGTACCAGCACTACCGCACCTATTACCAACCGAA CAACGCCATTCTGGTGATCGTGGGGGATATCGATCCAGACACCGCCCTGGTCGCGGTGGAACGACGCTTTGCGGGGCTTC CTGCCGGTACAGTACCCCCGCCAGTGCGGGCGCGAGAGCCGGACCAATGGGGAGAACGACGCGTGACTGTCCGGCGACCA GCCCCGACTGCCCAGCTGCTCATGGCCTGGCGCGTGCCCGCAGCGACCCACCCGGATATTCCCGCACTGCTCGTTCTCGA CGCGATTCTCTCCGGGGGAAAACCGGTCGCCTTCGGTGGCGGCGGAATGGGCCGCAGCGCGCGCCTCTACCGTGCACTGG TCGCTCCCGGACTTTGCACTGCAGCAGCCTCGAGCATGTCGCTCACCCTCGACCCGTTCGTCTTCACGGTATCCGCGACG CTCACGCCACTCGCTGAACCAGCTCGAGTGGAGACGATCATCGAGGAAACGATCGCGCGTCTCCGCGAGGATGCCGTCGG CCAGGACGAGCTGGCGCGTGCGAAGCGCCAGCTAACGGTGCAGTTCGCCGCCGCGAACGAAAGTGCGCAGAGCCGCGCGG CTCTGCTCGGCTCGCTCGCCGTTGTCGCGCCGGATCGATCACCGGAACGCCTGTTGGCCGAGCTCCAGGCAGTGGAACCG GACGACGTGGTGCGGGTCGCGAACACCTATCTCCGACCGGAACGACGGACGGTCGGCTGGTTAGAACCGGTAGCGAGCGA CGAGGAGCGCGTCGGGGTAACCGGTGAACCGCTCGAGACGCCGGCGCCCCGCTATTGGTTCACCGGTGGTGCATCGTCAC CATCGGAACCGGTCCTTTTGCCGCGGGTTCATCTCGTGCCAGTGACCGGCCGGTTGGCGAACGGGGCGCAGTTCGCCGGT CAGGCGATTCCAGCGAGCGGGCTCGCAGTGGTGAACATTCGCATCCCAGCTGGTGCGGCGCGGGACGGAACATTGCCTGG CATCGCTTCGGTCACGGGCCAGCTGCTCATGCGTGGAACACTGGCTCGCGACGAAGCTGCACTCAACGAGGAGCTGGACC GGCTGGGAGCGACTGTCAGCGTGAACGTCGGTCGCGATAGCGTGGATATCGGCCTGACCTGCCTCGTGGAAGTTCTGGAG CAGGCGCTACCGCTGTTGGTCGAGGTCATCGTGTCTCCCGCCTTCCTGCCCGAGCAGCTGCACCGGGTACGGCAGCAAGC GCTCACTGCACTGCGCCAGGCGCAGCAAAGCACGCGTGCCCAGGCCGATGCCTTGTTGCGGGCACTGCTCTATCCAGCCG GTCACCCGTATCATCATCGCATTCTCGGTACCGAGGAGAGTTTGGAGTCGCTCACCGTCAAGGCAGTGCGAGCGTTCCAC GAGACCTACTATCGACCCGCGGGAGCAGTCATCACGGTGGCCGGTGGTCTGGAACCCGAGATCGTCAGCGAGTGGCTGGG GCGAGCATTGGCCTCCTGGCAGGGAACCGCTCCGCCGCTCGAGATTCCGGACGTCGTCCCCGCTGACCGCGGCGCACGCC GGACGGAGACACTGCCCGGAAAGCAACAGGCCGATCTCGCACTGGGAATCCTGACCATACCACGCCGACACCCGGACTAC GAGGCATTACGCCTCGCCAACGTCGTACTGGGGCGGCTGGGTCTCATGGGGCGCATCGGTGCACGGGTCCGTGAACGGTC CGGGCTGGCCTATTACGCGGCAAGTGCGTTGGAGACGGGGCTGGGGACGGGTTTCTGGACCGCGTACGCGGGAGTGGCAC CCGTGCACGTCGAGCGGGTGATCGGGCAGATTGTGGAAGAGGTCGAGCAGTTCCGTCGCGAAGGTCCGACTCCGCAGGAA CTGGCCGACGCCAAGACCGCGCTCGCTGGGACAGTCGTGCTCGGACTCTCCACCGCGGCTGGTCTAGCGGGAGCACTGGC GGACTCGCTCTTTTACGAACTCGGTCTGGATTACCTCGAGCGACTCCCTGAGCGCTTGGCAGCGATCGACGAGGCTATGG TCCGTGCAGTGGCTGTCCGCTACCTCGATCCAACACGTCTGCAGGTCACGATCGTCGGTCCCGCGGCAGACGGGCCACTC AGCCCGCCGACACCGCAGCCTTGA
Upstream 100 bases:
>100_bases ATCCTCACGTTCGTGCTGCGCCGGCTGCTCCGCGGGGAGGCATGAGAGGACTGCGGTCGACCGGCTGCGTGCCCGGCGCG GCGTCGTGAGGAGGGGCTCG
Downstream 100 bases:
>100_bases CGACGCAGTAGCGGCCGACGACCGGCCAGCGCGGCGAGCCTGCGCAGCGTAACCAGCCGAACAGTCGCGCCCTCCGTCCC GACTCGCCGTTGTGCGGCCG
Product: peptidase M16 domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 887; Mature: 887
Protein sequence:
>887_residues MHDDGAFIATRLTNGLEVLLQPLRHAPVVSCWIWYRVGSRNEQPGLTGISHWVEHMLFKGTPRFPPGTIFRQVNRWGGTL NGFTWLDYTAYFETLPTPGWQLALDIEADRMVAAAFDPGEVERERTVILAERAGSENQPSTYLREEVLAASFRAHPYGHP VIGYREDLQTITRDDLYQHYRTYYQPNNAILVIVGDIDPDTALVAVERRFAGLPAGTVPPPVRAREPDQWGERRVTVRRP APTAQLLMAWRVPAATHPDIPALLVLDAILSGGKPVAFGGGGMGRSARLYRALVAPGLCTAAASSMSLTLDPFVFTVSAT LTPLAEPARVETIIEETIARLREDAVGQDELARAKRQLTVQFAAANESAQSRAALLGSLAVVAPDRSPERLLAELQAVEP DDVVRVANTYLRPERRTVGWLEPVASDEERVGVTGEPLETPAPRYWFTGGASSPSEPVLLPRVHLVPVTGRLANGAQFAG QAIPASGLAVVNIRIPAGAARDGTLPGIASVTGQLLMRGTLARDEAALNEELDRLGATVSVNVGRDSVDIGLTCLVEVLE QALPLLVEVIVSPAFLPEQLHRVRQQALTALRQAQQSTRAQADALLRALLYPAGHPYHHRILGTEESLESLTVKAVRAFH ETYYRPAGAVITVAGGLEPEIVSEWLGRALASWQGTAPPLEIPDVVPADRGARRTETLPGKQQADLALGILTIPRRHPDY EALRLANVVLGRLGLMGRIGARVRERSGLAYYAASALETGLGTGFWTAYAGVAPVHVERVIGQIVEEVEQFRREGPTPQE LADAKTALAGTVVLGLSTAAGLAGALADSLFYELGLDYLERLPERLAAIDEAMVRAVAVRYLDPTRLQVTIVGPAADGPL SPPTPQP
Sequences:
>Translated_887_residues MHDDGAFIATRLTNGLEVLLQPLRHAPVVSCWIWYRVGSRNEQPGLTGISHWVEHMLFKGTPRFPPGTIFRQVNRWGGTL NGFTWLDYTAYFETLPTPGWQLALDIEADRMVAAAFDPGEVERERTVILAERAGSENQPSTYLREEVLAASFRAHPYGHP VIGYREDLQTITRDDLYQHYRTYYQPNNAILVIVGDIDPDTALVAVERRFAGLPAGTVPPPVRAREPDQWGERRVTVRRP APTAQLLMAWRVPAATHPDIPALLVLDAILSGGKPVAFGGGGMGRSARLYRALVAPGLCTAAASSMSLTLDPFVFTVSAT LTPLAEPARVETIIEETIARLREDAVGQDELARAKRQLTVQFAAANESAQSRAALLGSLAVVAPDRSPERLLAELQAVEP DDVVRVANTYLRPERRTVGWLEPVASDEERVGVTGEPLETPAPRYWFTGGASSPSEPVLLPRVHLVPVTGRLANGAQFAG QAIPASGLAVVNIRIPAGAARDGTLPGIASVTGQLLMRGTLARDEAALNEELDRLGATVSVNVGRDSVDIGLTCLVEVLE QALPLLVEVIVSPAFLPEQLHRVRQQALTALRQAQQSTRAQADALLRALLYPAGHPYHHRILGTEESLESLTVKAVRAFH ETYYRPAGAVITVAGGLEPEIVSEWLGRALASWQGTAPPLEIPDVVPADRGARRTETLPGKQQADLALGILTIPRRHPDY EALRLANVVLGRLGLMGRIGARVRERSGLAYYAASALETGLGTGFWTAYAGVAPVHVERVIGQIVEEVEQFRREGPTPQE LADAKTALAGTVVLGLSTAAGLAGALADSLFYELGLDYLERLPERLAAIDEAMVRAVAVRYLDPTRLQVTIVGPAADGPL SPPTPQP >Mature_887_residues MHDDGAFIATRLTNGLEVLLQPLRHAPVVSCWIWYRVGSRNEQPGLTGISHWVEHMLFKGTPRFPPGTIFRQVNRWGGTL NGFTWLDYTAYFETLPTPGWQLALDIEADRMVAAAFDPGEVERERTVILAERAGSENQPSTYLREEVLAASFRAHPYGHP VIGYREDLQTITRDDLYQHYRTYYQPNNAILVIVGDIDPDTALVAVERRFAGLPAGTVPPPVRAREPDQWGERRVTVRRP APTAQLLMAWRVPAATHPDIPALLVLDAILSGGKPVAFGGGGMGRSARLYRALVAPGLCTAAASSMSLTLDPFVFTVSAT LTPLAEPARVETIIEETIARLREDAVGQDELARAKRQLTVQFAAANESAQSRAALLGSLAVVAPDRSPERLLAELQAVEP DDVVRVANTYLRPERRTVGWLEPVASDEERVGVTGEPLETPAPRYWFTGGASSPSEPVLLPRVHLVPVTGRLANGAQFAG QAIPASGLAVVNIRIPAGAARDGTLPGIASVTGQLLMRGTLARDEAALNEELDRLGATVSVNVGRDSVDIGLTCLVEVLE QALPLLVEVIVSPAFLPEQLHRVRQQALTALRQAQQSTRAQADALLRALLYPAGHPYHHRILGTEESLESLTVKAVRAFH ETYYRPAGAVITVAGGLEPEIVSEWLGRALASWQGTAPPLEIPDVVPADRGARRTETLPGKQQADLALGILTIPRRHPDY EALRLANVVLGRLGLMGRIGARVRERSGLAYYAASALETGLGTGFWTAYAGVAPVHVERVIGQIVEEVEQFRREGPTPQE LADAKTALAGTVVLGLSTAAGLAGALADSLFYELGLDYLERLPERLAAIDEAMVRAVAVRYLDPTRLQVTIVGPAADGPL SPPTPQP
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Homo sapiens, GI94538354, Length=386, Percent_Identity=24.6113989637306, Blast_Score=107, Evalue=6e-23, Organism=Homo sapiens, GI46593007, Length=291, Percent_Identity=26.4604810996564, Blast_Score=104, Evalue=4e-22, Organism=Homo sapiens, GI155969707, Length=235, Percent_Identity=25.1063829787234, Blast_Score=72, Evalue=3e-12, Organism=Escherichia coli, GI1787770, Length=223, Percent_Identity=31.8385650224215, Blast_Score=107, Evalue=3e-24, Organism=Caenorhabditis elegans, GI71999683, Length=296, Percent_Identity=26.0135135135135, Blast_Score=94, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17553678, Length=186, Percent_Identity=26.8817204301075, Blast_Score=78, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6323192, Length=420, Percent_Identity=23.0952380952381, Blast_Score=110, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6321813, Length=416, Percent_Identity=23.3173076923077, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357875, Length=316, Percent_Identity=25.9493670886076, Blast_Score=110, Evalue=4e-24, Organism=Drosophila melanogaster, GI24646943, Length=316, Percent_Identity=25.9493670886076, Blast_Score=110, Evalue=4e-24, Organism=Drosophila melanogaster, GI19921772, Length=423, Percent_Identity=23.1678486997636, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI221513245, Length=246, Percent_Identity=25.609756097561, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 [H]
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]
EC number: 3.4.99.- [C]
Molecular weight: Translated: 95869; Mature: 95869
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHDDGAFIATRLTNGLEVLLQPLRHAPVVSCWIWYRVGSRNEQPGLTGISHWVEHMLFKG CCCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCC TPRFPPGTIFRQVNRWGGTLNGFTWLDYTAYFETLPTPGWQLALDIEADRMVAAAFDPGE CCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCC VERERTVILAERAGSENQPSTYLREEVLAASFRAHPYGHPVIGYREDLQTITRDDLYQHY CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH RTYYQPNNAILVIVGDIDPDTALVAVERRFAGLPAGTVPPPVRAREPDQWGERRVTVRRP HHHCCCCCEEEEEEECCCCCHHHEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECC APTAQLLMAWRVPAATHPDIPALLVLDAILSGGKPVAFGGGGMGRSARLYRALVAPGLCT CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHH AAASSMSLTLDPFVFTVSATLTPLAEPARVETIIEETIARLREDAVGQDELARAKRQLTV HHHCCCEEEECCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEE QFAAANESAQSRAALLGSLAVVAPDRSPERLLAELQAVEPDDVVRVANTYLRPERRTVGW EEEECCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCH LEPVASDEERVGVTGEPLETPAPRYWFTGGASSPSEPVLLPRVHLVPVTGRLANGAQFAG HCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCEEEEEECCCCCCCHHHCC QAIPASGLAVVNIRIPAGAARDGTLPGIASVTGQLLMRGTLARDEAALNEELDRLGATVS CCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE VNVGRDSVDIGLTCLVEVLEQALPLLVEVIVSPAFLPEQLHRVRQQALTALRQAQQSTRA EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QADALLRALLYPAGHPYHHRILGTEESLESLTVKAVRAFHETYYRPAGAVITVAGGLEPE HHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH IVSEWLGRALASWQGTAPPLEIPDVVPADRGARRTETLPGKQQADLALGILTIPRRHPDY HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCH EALRLANVVLGRLGLMGRIGARVRERSGLAYYAASALETGLGTGFWTAYAGVAPVHVERV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHH IGQIVEEVEQFRREGPTPQELADAKTALAGTVVLGLSTAAGLAGALADSLFYELGLDYLE HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLPERLAAIDEAMVRAVAVRYLDPTRLQVTIVGPAADGPLSPPTPQP HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MHDDGAFIATRLTNGLEVLLQPLRHAPVVSCWIWYRVGSRNEQPGLTGISHWVEHMLFKG CCCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCC TPRFPPGTIFRQVNRWGGTLNGFTWLDYTAYFETLPTPGWQLALDIEADRMVAAAFDPGE CCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCC VERERTVILAERAGSENQPSTYLREEVLAASFRAHPYGHPVIGYREDLQTITRDDLYQHY CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH RTYYQPNNAILVIVGDIDPDTALVAVERRFAGLPAGTVPPPVRAREPDQWGERRVTVRRP HHHCCCCCEEEEEEECCCCCHHHEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECC APTAQLLMAWRVPAATHPDIPALLVLDAILSGGKPVAFGGGGMGRSARLYRALVAPGLCT CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCHHH AAASSMSLTLDPFVFTVSATLTPLAEPARVETIIEETIARLREDAVGQDELARAKRQLTV HHHCCCEEEECCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEE QFAAANESAQSRAALLGSLAVVAPDRSPERLLAELQAVEPDDVVRVANTYLRPERRTVGW EEEECCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCH LEPVASDEERVGVTGEPLETPAPRYWFTGGASSPSEPVLLPRVHLVPVTGRLANGAQFAG HCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCEEEEEECCCCCCCHHHCC QAIPASGLAVVNIRIPAGAARDGTLPGIASVTGQLLMRGTLARDEAALNEELDRLGATVS CCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE VNVGRDSVDIGLTCLVEVLEQALPLLVEVIVSPAFLPEQLHRVRQQALTALRQAQQSTRA EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QADALLRALLYPAGHPYHHRILGTEESLESLTVKAVRAFHETYYRPAGAVITVAGGLEPE HHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH IVSEWLGRALASWQGTAPPLEIPDVVPADRGARRTETLPGKQQADLALGILTIPRRHPDY HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCH EALRLANVVLGRLGLMGRIGARVRERSGLAYYAASALETGLGTGFWTAYAGVAPVHVERV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHH IGQIVEEVEQFRREGPTPQELADAKTALAGTVVLGLSTAAGLAGALADSLFYELGLDYLE HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLPERLAAIDEAMVRAVAVRYLDPTRLQVTIVGPAADGPLSPPTPQP HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]