| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635904
Identifier: 221635904
GI number: 221635904
Start: 489568
End: 490167
Strand: Reverse
Name: 221635904
Synonym: trd_A0498
Alternate gene names: NA
Gene position: 490167-489568 (Counterclockwise)
Preceding gene: 221635905
Following gene: 221635903
Centisome position: 53.41
GC content: 64.33
Gene sequence:
>600_bases GTGGTCAGCTTCACCTTCATGACGGGCCGGTTCGACCGAGCGGGTGCGGCTCTCCTGGCTCTCGTCTACCTCGCCGCGTG TCTCCTCTTCCCTCCAGTAGCAGTCCTCGAGCAGCTCCCGTATTTCGGGATCGCCGTCACGCTGGCGGCCGTGGGACAGA CGGTACTGCCAGTCGCTGCGGCGCAGCGCCTGCTGCCGCTGGCTCGCGAAGAGGGGCATGCCATCAGCGCGTTGCGGGTG AAGGTAGGGCTGTCGCTCCTCGTCGTCGCCTTCTCGGAGAAGCTCCTCAACCCGGAACTCGGCGATACATTCCTCAGAGC GTACCCGTACTTCAACGTCGTGGGGACGCTGTTCGGCTGGACCTGGTTCTCCGACCGGCTGTTCGGGGATATCGCTGGCA TCGTCGTGGCGACGATCGGCATTCTCCTCCTTACAGGAGTGTTGACGCGCGTCGTCATCCTCGCGATGTGGGTCCCCTTC AACCTGACCGTCCCGCTCCTGCCGCCGATCGACCTCCTCAGTCATCTGCCGATCTTCGGCATCATGTCTCTGCTCCTCTT GTACGGTGCCAGCGTCGCCCCACGATCGGTCCTCCGCTGA
Upstream 100 bases:
>100_bases GATCAGCCTGATCTGGTTCGCCTCTCGACGCCAGCTCCTCGCCCCGCCGTTACCGTGGCCCGCCTCTCCGCTCGGCTGGG ACCTGCTCGCGGGAGTGCTC
Downstream 100 bases:
>100_bases CTGCGCCCCGCCTTGATCAGTGAGCTGGCTCGCGTGCAACGCCGGCTACGGGGCGAAGACGAGCCGCCAACCTCGGCTGA GCAGTAACTGGCCGGTCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 199; Mature: 199
Protein sequence:
>199_residues MVSFTFMTGRFDRAGAALLALVYLAACLLFPPVAVLEQLPYFGIAVTLAAVGQTVLPVAAAQRLLPLAREEGHAISALRV KVGLSLLVVAFSEKLLNPELGDTFLRAYPYFNVVGTLFGWTWFSDRLFGDIAGIVVATIGILLLTGVLTRVVILAMWVPF NLTVPLLPPIDLLSHLPIFGIMSLLLLYGASVAPRSVLR
Sequences:
>Translated_199_residues MVSFTFMTGRFDRAGAALLALVYLAACLLFPPVAVLEQLPYFGIAVTLAAVGQTVLPVAAAQRLLPLAREEGHAISALRV KVGLSLLVVAFSEKLLNPELGDTFLRAYPYFNVVGTLFGWTWFSDRLFGDIAGIVVATIGILLLTGVLTRVVILAMWVPF NLTVPLLPPIDLLSHLPIFGIMSLLLLYGASVAPRSVLR >Mature_199_residues MVSFTFMTGRFDRAGAALLALVYLAACLLFPPVAVLEQLPYFGIAVTLAAVGQTVLPVAAAQRLLPLAREEGHAISALRV KVGLSLLVVAFSEKLLNPELGDTFLRAYPYFNVVGTLFGWTWFSDRLFGDIAGIVVATIGILLLTGVLTRVVILAMWVPF NLTVPLLPPIDLLSHLPIFGIMSLLLLYGASVAPRSVLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21448; Mature: 21448
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSFTFMTGRFDRAGAALLALVYLAACLLFPPVAVLEQLPYFGIAVTLAAVGQTVLPVAA CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH AQRLLPLAREEGHAISALRVKVGLSLLVVAFSEKLLNPELGDTFLRAYPYFNVVGTLFGW HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH TWFSDRLFGDIAGIVVATIGILLLTGVLTRVVILAMWVPFNLTVPLLPPIDLLSHLPIFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHH IMSLLLLYGASVAPRSVLR HHHHHHHHCCCCCCHHHCC >Mature Secondary Structure MVSFTFMTGRFDRAGAALLALVYLAACLLFPPVAVLEQLPYFGIAVTLAAVGQTVLPVAA CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH AQRLLPLAREEGHAISALRVKVGLSLLVVAFSEKLLNPELGDTFLRAYPYFNVVGTLFGW HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH TWFSDRLFGDIAGIVVATIGILLLTGVLTRVVILAMWVPFNLTVPLLPPIDLLSHLPIFG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHH IMSLLLLYGASVAPRSVLR HHHHHHHHCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA