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The map label for this gene is 221635869

Identifier: 221635869

GI number: 221635869

Start: 451682

End: 452884

Strand: Reverse

Name: 221635869

Synonym: trd_A0463

Alternate gene names: NA

Gene position: 452884-451682 (Counterclockwise)

Preceding gene: 221635871

Following gene: 221635868

Centisome position: 49.35

GC content: 67.66

Gene sequence:

>1203_bases
GTGCTCGTCATGACGGTGTTGGGTACGAGTACCTATCAAGAAACGACCTACGTGTGGGACGATGGGGAGCGTATTCGGCG
ACACCGGAGCGCTCTCTTCCCTGTCGCGCTCGATGCCTGGCTGGCCGCGGAACGGTTCCTCGTGCTCCTGACACCCGATA
GCGCAGCCCACGCGAACTGGCGGCAACTCGAGGCGCATCTCGGCGAGCGGGCACAGCCGGTGCCCATTCCAGCCGGGAAA
AGCGAGGCCGAACTCTGGCAGATCTTCGACGCACTGGTCGCCGCCGTTCCCGAACAGGCTGAGCTGGTGCTCGACGTCAC
ACACGGCTTCCGCTCGTTGCCGCTCTTCGCCGCGGTCGCCGCGCTGGTTTTGCGACAGTTGCGTGGGGTGACCATCCAGC
GGATCCTCTACGGTGCCTTCGAGGCGCGCGACCGCGAGCGCGACGAGACGCCGGTCTTCGATCTCAGCCCTCTCGTCGAT
CTGGCCGAGTGGTCGAGTGGCATCGAGGCTCTCGAACGGAGCGGAGACGGGCGCCTGCTCGCCGCGCGGATCCAGGCGAC
CCACAGCGATCTGTACCGTAAACAGGCCCCCGAACTGCCTCGCCAGCTCGCCGGGGTCGGCAACAAGCTCGGGGCGCTGA
GCCAGGCCGTCTGGCTCAATCGTCCGCTCGAGGCACTGGCAGCTGCCCATCAACTCGACCAGCAACTCGCGACCGCACAG
GAGGAGCTGGCTCGCTGGACGCCGCCCTTCGCCGTGCTCGCTGAGCGGGTGCGCGCGGAGATCGCGCCGCTCGCTCATCC
AAACCCGGAGCAGCTCGACGAGGGCAACCTCCGGGCCCAGCTCGAGCTGATCCGCTACGCGCTCGGCAAGGGCCTCGTCC
TCCAGGCGGTCACGCTGGCCCGCGAGTGGCTGGTGAGCTGGTACCTCTGGCGGACGTTTCCGGAACTGCGGCCGAGTTGG
CTGCAGCGGGAGAGTCGTCAGCGGGCCGAAAACGAGCTCAATGCGCTCCAGCAGCAGCTGCGGGACGGCTCACCGCTGCT
GCACGCGTTGCCCGAGCGGCGGATCGCCGAGGTATGGGACCAGGTCACCCAACTCCGCAACGATCTCGCCCACTGCGGCA
TGCGGACCGACCGGAGCACACCCGATCGGGTCACCCGCCGCGCTCGAGAACTCGTGACCGAACTCGCCACACTTCTCCAG
TAA

Upstream 100 bases:

>100_bases
TCTCCTTTTTTATCATCAGGCGACGAGGTGAACACTGGGGTTCCCGTGGCGAGCGGACCGCGGCAAGCATGTCGCGCGTG
ACCAGCGGAGGGAGGCAGTC

Downstream 100 bases:

>100_bases
ATGAGCGCCTCCCAGAGCGCCCTTCCACTGGCTGGCTACCCAGCCGTGGAATCGCACGCAACTGACCGTCCGGCCGGACC
GGTGACTCGAGCGGGTCGAG

Product: crispr-associated protein, Csx2 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLVMTVLGTSTYQETTYVWDDGERIRRHRSALFPVALDAWLAAERFLVLLTPDSAAHANWRQLEAHLGERAQPVPIPAGK
SEAELWQIFDALVAAVPEQAELVLDVTHGFRSLPLFAAVAALVLRQLRGVTIQRILYGAFEARDRERDETPVFDLSPLVD
LAEWSSGIEALERSGDGRLLAARIQATHSDLYRKQAPELPRQLAGVGNKLGALSQAVWLNRPLEALAAAHQLDQQLATAQ
EELARWTPPFAVLAERVRAEIAPLAHPNPEQLDEGNLRAQLELIRYALGKGLVLQAVTLAREWLVSWYLWRTFPELRPSW
LQRESRQRAENELNALQQQLRDGSPLLHALPERRIAEVWDQVTQLRNDLAHCGMRTDRSTPDRVTRRARELVTELATLLQ

Sequences:

>Translated_400_residues
MLVMTVLGTSTYQETTYVWDDGERIRRHRSALFPVALDAWLAAERFLVLLTPDSAAHANWRQLEAHLGERAQPVPIPAGK
SEAELWQIFDALVAAVPEQAELVLDVTHGFRSLPLFAAVAALVLRQLRGVTIQRILYGAFEARDRERDETPVFDLSPLVD
LAEWSSGIEALERSGDGRLLAARIQATHSDLYRKQAPELPRQLAGVGNKLGALSQAVWLNRPLEALAAAHQLDQQLATAQ
EELARWTPPFAVLAERVRAEIAPLAHPNPEQLDEGNLRAQLELIRYALGKGLVLQAVTLAREWLVSWYLWRTFPELRPSW
LQRESRQRAENELNALQQQLRDGSPLLHALPERRIAEVWDQVTQLRNDLAHCGMRTDRSTPDRVTRRARELVTELATLLQ
>Mature_400_residues
MLVMTVLGTSTYQETTYVWDDGERIRRHRSALFPVALDAWLAAERFLVLLTPDSAAHANWRQLEAHLGERAQPVPIPAGK
SEAELWQIFDALVAAVPEQAELVLDVTHGFRSLPLFAAVAALVLRQLRGVTIQRILYGAFEARDRERDETPVFDLSPLVD
LAEWSSGIEALERSGDGRLLAARIQATHSDLYRKQAPELPRQLAGVGNKLGALSQAVWLNRPLEALAAAHQLDQQLATAQ
EELARWTPPFAVLAERVRAEIAPLAHPNPEQLDEGNLRAQLELIRYALGKGLVLQAVTLAREWLVSWYLWRTFPELRPSW
LQRESRQRAENELNALQQQLRDGSPLLHALPERRIAEVWDQVTQLRNDLAHCGMRTDRSTPDRVTRRARELVTELATLLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013383
- InterPro:   IPR011742 [H]

Pfam domain/function: PF09530 Cas_TM1812 [H]

EC number: NA

Molecular weight: Translated: 45151; Mature: 45151

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVMTVLGTSTYQETTYVWDDGERIRRHRSALFPVALDAWLAAERFLVLLTPDSAAHANW
CEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHH
RQLEAHLGERAQPVPIPAGKSEAELWQIFDALVAAVPEQAELVLDVTHGFRSLPLFAAVA
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHH
ALVLRQLRGVTIQRILYGAFEARDRERDETPVFDLSPLVDLAEWSSGIEALERSGDGRLL
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
AARIQATHSDLYRKQAPELPRQLAGVGNKLGALSQAVWLNRPLEALAAAHQLDQQLATAQ
HHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EELARWTPPFAVLAERVRAEIAPLAHPNPEQLDEGNLRAQLELIRYALGKGLVLQAVTLA
HHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
REWLVSWYLWRTFPELRPSWLQRESRQRAENELNALQQQLRDGSPLLHALPERRIAEVWD
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
QVTQLRNDLAHCGMRTDRSTPDRVTRRARELVTELATLLQ
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLVMTVLGTSTYQETTYVWDDGERIRRHRSALFPVALDAWLAAERFLVLLTPDSAAHANW
CEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHH
RQLEAHLGERAQPVPIPAGKSEAELWQIFDALVAAVPEQAELVLDVTHGFRSLPLFAAVA
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHH
ALVLRQLRGVTIQRILYGAFEARDRERDETPVFDLSPLVDLAEWSSGIEALERSGDGRLL
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
AARIQATHSDLYRKQAPELPRQLAGVGNKLGALSQAVWLNRPLEALAAAHQLDQQLATAQ
HHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EELARWTPPFAVLAERVRAEIAPLAHPNPEQLDEGNLRAQLELIRYALGKGLVLQAVTLA
HHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
REWLVSWYLWRTFPELRPSWLQRESRQRAENELNALQQQLRDGSPLLHALPERRIAEVWD
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
QVTQLRNDLAHCGMRTDRSTPDRVTRRARELVTELATLLQ
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]