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The map label for this gene is ydhC [H]

Identifier: 221635749

GI number: 221635749

Start: 330806

End: 331549

Strand: Reverse

Name: ydhC [H]

Synonym: trd_A0343

Alternate gene names: 221635749

Gene position: 331549-330806 (Counterclockwise)

Preceding gene: 221635750

Following gene: 221635748

Centisome position: 36.13

GC content: 57.8

Gene sequence:

>744_bases
ATGCAGAATCTGCCACGAGTCAATCGGATCATCGCTCCGACCCGGAGTATGGCTACGGCTATCTTGCAGGAGGCTATTGC
GAAGCGGCAGCTCCGTCCAGGAATGCGCATCACCGAGCGTGCACTCGCCTCGCAGTTAGGCATTTCCCGAGCGACGTTGC
GCGAAGCCCTTCGTGAACTCGAGACCGTCGGATTGTTGCAACGTGACTCACGTGGGCATCTGACCGTTCCCGAGTTCGAC
ACGAACCGCGCACGGGCGATCTACGAGCTGCGCGAAGTTCTAGAGGGTCTCGCGGCATCTCTCTTTGCCTTGCGCGCAAC
TGACGACGAGCTTCAACGGCTGAAAGACGAGCTGGAATGCCTGCGGGCCGCGGCGTACGCAGGTAACGTTACGCAGTATC
TCCTGTGCAAGAACAGATACTACGCGATCATCATCGAAGGCGCCCGCAACCCGGTACTCGCCGATTTCCTCAACTCGCTG
CAGTGGCACTTCCGCTTCCTACGCTCGACATCGCTGCAAGCTCCTGGTCGCCTTCTCCGCAGCTTCAACGAGATCGAGGA
TCTTACTCGAGCACTTTGCGAGCGCAATCCGGTACTTGCGGAGAATCTCGCGCGCCTGCATATCCGTAACGCCTTTGCAG
CTCTCCTCCAACGTCTCTCGCACTTAGACACCAGTCACAACCCGGAGACGGACAGCTCAATGTCAAGCACGGAGCTGCTA
GAAATAACCTTTGGTATTCAGTAA

Upstream 100 bases:

>100_bases
GTGATGTCGAATCGTCAGACTCGCGAACGCGGCAATTGCTGACTGATGGTCTTGACGGTCAGACCATCAGACGGTATAGT
GTGTGTAGGAGGACGAACTC

Downstream 100 bases:

>100_bases
GGAGGTGCACACTTGCCTGCCGAGTAGCGATCAGCGGCGTTTCGAGAACGCCAACTGGTGATCGAGATTCTCTATCAGTA
GGTCCGTATTCGACGCGAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MQNLPRVNRIIAPTRSMATAILQEAIAKRQLRPGMRITERALASQLGISRATLREALRELETVGLLQRDSRGHLTVPEFD
TNRARAIYELREVLEGLAASLFALRATDDELQRLKDELECLRAAAYAGNVTQYLLCKNRYYAIIIEGARNPVLADFLNSL
QWHFRFLRSTSLQAPGRLLRSFNEIEDLTRALCERNPVLAENLARLHIRNAFAALLQRLSHLDTSHNPETDSSMSSTELL
EITFGIQ

Sequences:

>Translated_247_residues
MQNLPRVNRIIAPTRSMATAILQEAIAKRQLRPGMRITERALASQLGISRATLREALRELETVGLLQRDSRGHLTVPEFD
TNRARAIYELREVLEGLAASLFALRATDDELQRLKDELECLRAAAYAGNVTQYLLCKNRYYAIIIEGARNPVLADFLNSL
QWHFRFLRSTSLQAPGRLLRSFNEIEDLTRALCERNPVLAENLARLHIRNAFAALLQRLSHLDTSHNPETDSSMSSTELL
EITFGIQ
>Mature_247_residues
MQNLPRVNRIIAPTRSMATAILQEAIAKRQLRPGMRITERALASQLGISRATLREALRELETVGLLQRDSRGHLTVPEFD
TNRARAIYELREVLEGLAASLFALRATDDELQRLKDELECLRAAAYAGNVTQYLLCKNRYYAIIIEGARNPVLADFLNSL
QWHFRFLRSTSLQAPGRLLRSFNEIEDLTRALCERNPVLAENLARLHIRNAFAALLQRLSHLDTSHNPETDSSMSSTELL
EITFGIQ

Specific function: Transcriptional Repressor For The Pyruvate Dehydrogenase Complex Genes ACEef And Lpd. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28008; Mature: 28008

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLPRVNRIIAPTRSMATAILQEAIAKRQLRPGMRITERALASQLGISRATLREALREL
CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
ETVGLLQRDSRGHLTVPEFDTNRARAIYELREVLEGLAASLFALRATDDELQRLKDELEC
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LRAAAYAGNVTQYLLCKNRYYAIIIEGARNPVLADFLNSLQWHFRFLRSTSLQAPGRLLR
HHHHHHHCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
SFNEIEDLTRALCERNPVLAENLARLHIRNAFAALLQRLSHLDTSHNPETDSSMSSTELL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHE
EITFGIQ
EEEECCC
>Mature Secondary Structure
MQNLPRVNRIIAPTRSMATAILQEAIAKRQLRPGMRITERALASQLGISRATLREALREL
CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
ETVGLLQRDSRGHLTVPEFDTNRARAIYELREVLEGLAASLFALRATDDELQRLKDELEC
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LRAAAYAGNVTQYLLCKNRYYAIIIEGARNPVLADFLNSLQWHFRFLRSTSLQAPGRLLR
HHHHHHHCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
SFNEIEDLTRALCERNPVLAENLARLHIRNAFAALLQRLSHLDTSHNPETDSSMSSTELL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHE
EITFGIQ
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]