| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635721
Identifier: 221635721
GI number: 221635721
Start: 301557
End: 302822
Strand: Reverse
Name: 221635721
Synonym: trd_A0314
Alternate gene names: NA
Gene position: 302822-301557 (Counterclockwise)
Preceding gene: 221635723
Following gene: 221635718
Centisome position: 33.0
GC content: 66.43
Gene sequence:
>1266_bases GTGACCGCTGACCGTCCAGCTGCACCATCCGGAGAGACATCGCGACTGGCGCGCTTGCACGCCGCTCTCACCGCGAGCGC GCTCGCGGTGCCAGCCTACCGACGTTATTGGGCCGGCATGCTCGTTTCCAACATCGGGAGCTGGCTCCAACTCGTTGCCC AGGGATGGCTCATCCTGGCGCTCACCGGCTCGCCAGCCTATCTGGGCCTGTACGGCCTCTTGCGCTCCATTCCGACCCTG ACGATCACGCTGGTTGGCGGGGCAGTCGCCGACCGGGTCGATCGGCGCCGAATCCTGCTCGTCACCCAGTCGTTGGCCGC CCTGCTCGCGCTGCTTCTCGGAATCCTCGATCTCACCGGGACGATCAGACCGTGGCAAATTCTGGCGATCGCATTCGCTA CCGCGACCGTCATGGCGTTCGACAATCCGGCGCGCCAGGCCATGGTTCCTGGTCTCGTGGGGAACGACCGAGTCGCTTCT GCCGTCGGTTTGAACTCCGCTGCGTGGAACGCGGCCGCAGTGATCGGCCCATCGCTGGCCGGCTTGCTGGTCGCTGCGGC CGGCACCGGTTGGGCCTTCGTGCTCAACGGGGTGAGTTATCTTCCGGTACTCTGGGCCGTCTGGACAATCGCACCAGCAC CTCCCGAGCGCACGAGCACGACTTCCCTGCTCGTCCACGTCCGCGTTGGCCTGCGGGCTGTCCGGCACGATCGGCGCCTG CTCGGTCTGCTGACCTTGCTGGCCGTGCCCACCTTCCTCGGCCGCCCCTACCTGCAGCTCATGCCGGTTTTCGCCCGCGA TATCCTGCACACCAGCGCCGCGGGATACGGTGCCCTCATGGGAATCAACGGAGTCGGCGCGTTGAGCGGGGCTCTGCTCG TTGGGCGGCTGGGCGCACGCCAGGATCGCGGTCGCATTCTCTTCCTCGTCAACCTGGTCTTCGCCGCGACACTCGTTGGG TTCGCGCTCTCACGTTGGCTCGAGCTCTCGGCGATCCTGCTCTTCCTCATCGGTGCCAGCCAGACGCTCCTCATGGCTCT CACGAACACGCTCATCCAGCTGATCGTTCCGGACGAGTTCCGCGGCCGCGTGATGGCCCTCTACACGTTGATTCCGATGG GCTTGATGCCACTGGGGACGATGGCGCTCGGCGGGATCGGGGATCTTTTCGGTGTGCCAGCCACGGTCGCGGTCGCCGCA TCGGGTGCGCTCGTCTTCACGCTGGCCGGTCGCCGGCTCTTTCCCGAGGTCTACCGGCTCGCTTGA
Upstream 100 bases:
>100_bases GGGATCGACTGCCACGCTCGTCCAGCATCTGTTATGCTGCCAGCCGGTTTCTCGATCGCGCCAGCGCCCGGCAAGGTCGG CAGCGCGAAGGGATAGACGC
Downstream 100 bases:
>100_bases CGTTCGCGATCCGGCTCGGGAGCGAGTTCTGCTCGCACGGTCGCGAGCTTCCCCTGACGCACGACTCCGAGCACGATCGT GCTGCCGACCGGTGCGCGAC
Product: permease of the major facilitator superfamily
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Integral Membrane Efflux Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; Transmembrane Efflux Protein; Multidrug ABC Transporter; MFS Permease; Permeases Of Facilitator Superfamily; Permease; Mfs Transporter; Transporter Facilitator Family; Arabinose Efflux Permease Family Protein; Permease Of Facilitator Superfamily; MFS Family Transporter; Permease Protein; Drug Resistance Efflux Protein; MFS Family Transporter Protein; Facilitator Superfamily; Transmembrane Protein; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Facilitator MFS1 Protein; Permease Facilitator Superfamily; MFS Transporter; MFS Family Membrane Efflux Protein; Macrolide-Efflux Protein; Facilitator Superfamily Multidrug Efflux Transporter; Transporter Facilitator Family Protein; MFS Family Diterpenoid Transporter; Transport Transmembrane Protein; MFS Superfamily Transporter; Permeases Of Facilitator Superfamily Protein
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MTADRPAAPSGETSRLARLHAALTASALAVPAYRRYWAGMLVSNIGSWLQLVAQGWLILALTGSPAYLGLYGLLRSIPTL TITLVGGAVADRVDRRRILLVTQSLAALLALLLGILDLTGTIRPWQILAIAFATATVMAFDNPARQAMVPGLVGNDRVAS AVGLNSAAWNAAAVIGPSLAGLLVAAAGTGWAFVLNGVSYLPVLWAVWTIAPAPPERTSTTSLLVHVRVGLRAVRHDRRL LGLLTLLAVPTFLGRPYLQLMPVFARDILHTSAAGYGALMGINGVGALSGALLVGRLGARQDRGRILFLVNLVFAATLVG FALSRWLELSAILLFLIGASQTLLMALTNTLIQLIVPDEFRGRVMALYTLIPMGLMPLGTMALGGIGDLFGVPATVAVAA SGALVFTLAGRRLFPEVYRLA
Sequences:
>Translated_421_residues MTADRPAAPSGETSRLARLHAALTASALAVPAYRRYWAGMLVSNIGSWLQLVAQGWLILALTGSPAYLGLYGLLRSIPTL TITLVGGAVADRVDRRRILLVTQSLAALLALLLGILDLTGTIRPWQILAIAFATATVMAFDNPARQAMVPGLVGNDRVAS AVGLNSAAWNAAAVIGPSLAGLLVAAAGTGWAFVLNGVSYLPVLWAVWTIAPAPPERTSTTSLLVHVRVGLRAVRHDRRL LGLLTLLAVPTFLGRPYLQLMPVFARDILHTSAAGYGALMGINGVGALSGALLVGRLGARQDRGRILFLVNLVFAATLVG FALSRWLELSAILLFLIGASQTLLMALTNTLIQLIVPDEFRGRVMALYTLIPMGLMPLGTMALGGIGDLFGVPATVAVAA SGALVFTLAGRRLFPEVYRLA >Mature_420_residues TADRPAAPSGETSRLARLHAALTASALAVPAYRRYWAGMLVSNIGSWLQLVAQGWLILALTGSPAYLGLYGLLRSIPTLT ITLVGGAVADRVDRRRILLVTQSLAALLALLLGILDLTGTIRPWQILAIAFATATVMAFDNPARQAMVPGLVGNDRVASA VGLNSAAWNAAAVIGPSLAGLLVAAAGTGWAFVLNGVSYLPVLWAVWTIAPAPPERTSTTSLLVHVRVGLRAVRHDRRLL GLLTLLAVPTFLGRPYLQLMPVFARDILHTSAAGYGALMGINGVGALSGALLVGRLGARQDRGRILFLVNLVFAATLVGF ALSRWLELSAILLFLIGASQTLLMALTNTLIQLIVPDEFRGRVMALYTLIPMGLMPLGTMALGGIGDLFGVPATVAVAAS GALVFTLAGRRLFPEVYRLA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44288; Mature: 44157
Theoretical pI: Translated: 11.80; Mature: 11.80
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTADRPAAPSGETSRLARLHAALTASALAVPAYRRYWAGMLVSNIGSWLQLVAQGWLILA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE LTGSPAYLGLYGLLRSIPTLTITLVGGAVADRVDRRRILLVTQSLAALLALLLGILDLTG ECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCC TIRPWQILAIAFATATVMAFDNPARQAMVPGLVGNDRVASAVGLNSAAWNAAAVIGPSLA CCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHCHHHH GLLVAAAGTGWAFVLNGVSYLPVLWAVWTIAPAPPERTSTTSLLVHVRVGLRAVRHDRRL HHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LGLLTLLAVPTFLGRPYLQLMPVFARDILHTSAAGYGALMGINGVGALSGALLVGRLGAR HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHCCCC QDRGRILFLVNLVFAATLVGFALSRWLELSAILLFLIGASQTLLMALTNTLIQLIVPDEF CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH RGRVMALYTLIPMGLMPLGTMALGGIGDLFGVPATVAVAASGALVFTLAGRRLFPEVYRL CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCEEEEECCCHHHHHHHHC A C >Mature Secondary Structure TADRPAAPSGETSRLARLHAALTASALAVPAYRRYWAGMLVSNIGSWLQLVAQGWLILA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE LTGSPAYLGLYGLLRSIPTLTITLVGGAVADRVDRRRILLVTQSLAALLALLLGILDLTG ECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCC TIRPWQILAIAFATATVMAFDNPARQAMVPGLVGNDRVASAVGLNSAAWNAAAVIGPSLA CCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHCHHHH GLLVAAAGTGWAFVLNGVSYLPVLWAVWTIAPAPPERTSTTSLLVHVRVGLRAVRHDRRL HHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LGLLTLLAVPTFLGRPYLQLMPVFARDILHTSAAGYGALMGINGVGALSGALLVGRLGAR HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHCCCC QDRGRILFLVNLVFAATLVGFALSRWLELSAILLFLIGASQTLLMALTNTLIQLIVPDEF CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH RGRVMALYTLIPMGLMPLGTMALGGIGDLFGVPATVAVAASGALVFTLAGRRLFPEVYRL CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCEEEEECCCHHHHHHHHC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA