| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635717
Identifier: 221635717
GI number: 221635717
Start: 298105
End: 299493
Strand: Reverse
Name: 221635717
Synonym: trd_A0311
Alternate gene names: NA
Gene position: 299493-298105 (Counterclockwise)
Preceding gene: 221635718
Following gene: 221635716
Centisome position: 32.63
GC content: 65.66
Gene sequence:
>1389_bases ATGGCAGGTCCGGTGGTCGTTCCGGTACTCCCGACCTATCTCGATCCGGAGCGCGTGACTCACTGTGCGATTCCCTTCGG TCGAGCGATCGCTCAGCGACTCGGGAGTGAACTCGTTCTCCTTTCCATTGTCGAGGTCACCGAATCCCTGCGCTCGTATC TGGAAGCGGAGGGAGAGCAGGTCGAACAGTTGGTGCAGCGCTGGCTGGAACAGCGCCGCGCGTCGCTCGAACGGCTGCGG AACGCGATCAGCGACGTGTCCTGTCGCATCGAGGTGCGCCTGGGCGAGCCGGCCAAGGAGATCGTCGCGTACGCCGATGC GAGTCAGGCAGCGGTCATCGTCATGAGCAGCCACGGCCGCTTGGGTGTGGCCCGTTTGCTAGTGGGGAGCGTCACCTTCA GCGTGATGCAGCGGGCGCGGCAACCGGCGCTCGTCGTGCGCGCTCGTGTACCCGTTCCAGCTCCCAACGCCTCGGTAACG TTCTCGCCGGTTCTCGTCCCCCTCGATGGTTCAGCACTGGCCGAGGAGGCGATCGATACCGCGCTCGACCTGCTCGGTCA GGGTTCGGAGCCCCTGCAGCTCCACCTCTTTCATGTCCTCGCCGAGGAAGAAGATCCCGCGCGCTGGGAGCGATATCTCG AAGCCGTCGCTCAGCGAGTCCGTGCCCGCGGTTATCCGACCAGCTGGAGCCTCGGCAGTGGGCCAGTCGCCGAGACGATC GCGGCCGAAGCAGCCGCGCGCCAGGCTGGCCTCATCGCCATGGGCACGCACGGCATGAGCGGGATCCGGCGAGTGCTTTT GGGCTCGACGGCCGAGCACGTCCTCCATGCGACGACGGTGCCGCTCCTCCTCCACCGGCCACAGGCCGTCCGACAAGCCT TGGAAGAGCCGGCGACTGCGAACGAAACCCTGCGGGCACGCGATATCATGACGCCGGATCCAGTAACGGTCGGGCCAGAC GCCACGCTCGAACAGGTCGCTCGACTCATGCTCGACCGGCAGATCGGCGCCGTTCCAGTGGTCGATGCGGACGGCAGGCT GCTCGGCCTGATTCGCGAAGAGGACTTCCTGGCGCAGGAAAAGCCGATTCCTTTCGCGGCCTTCCGCGCCCCACAGCTCT TCGGACACTGGCTGAATGCGGAAGGGATCGAGCGGATCTACGCTGAAGCGCGGACGATGAAGGCAGGAGACGTTGCGCAA GCACCGGCAGTGACGGTGACGGAGGACACACCACTGAGCCGAATCGCCCAGCTCATGGTCGAACGCGACGTCCGGCACAT CCCGGTCGTGCGTGACGGCAAACTCGTCGGCATCGTCACCCGACATGATGTTCTCAAGGCAGTCGCCCGACAACGCAGCA CGTCAGCGACGACCGGGCACGCATCGTAG
Upstream 100 bases:
>100_bases CCGCTGAAGCGGCGAGGGCCAGGGTTACTAGCACCGCGAGGATCGCGATCATGATAGGCTACCCGTAGGGTAGTGAAGCG GACAGGGAGGGTTGGACACG
Downstream 100 bases:
>100_bases CCCAACGCGACTTCGCTGACTGCTGCGCAGATCGGAGAGCGAAGGGATCGCGTTCTGTGCGAGACACAGTACACTGGCAT GCCCTGACGGTAGCAGAAAC
Product: UspA domain protein, putative
Products: NA
Alternate protein names: CBS Domain Containing Membrane Protein; Signal-Transduction Protein; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; UspA Domain Protein; CBS Domain Containing Protein; CBS Domain-Containing Membrane Protein; IMP Dehydrogenase; UspA Domain-Containing Protein; Universal Stress Protein; Signal-Transduction Protein With CBS Domains; CBS Domain Pair-Containing Protein; CBS Domain Protein; PolyA Polymerase Family Protein; Transcriptional Regulator XRE Family; Cbs Domain; Cbs Domain Containing Protein; XRE Family Transcriptional Regulator; Signal Transduction Protein With Cbs Domains; Universal Stress Protein Uspa-Like Protein; Inosine-5-Monophosphate Dehydrogenase; CBS Domain Family Protein
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MAGPVVVPVLPTYLDPERVTHCAIPFGRAIAQRLGSELVLLSIVEVTESLRSYLEAEGEQVEQLVQRWLEQRRASLERLR NAISDVSCRIEVRLGEPAKEIVAYADASQAAVIVMSSHGRLGVARLLVGSVTFSVMQRARQPALVVRARVPVPAPNASVT FSPVLVPLDGSALAEEAIDTALDLLGQGSEPLQLHLFHVLAEEEDPARWERYLEAVAQRVRARGYPTSWSLGSGPVAETI AAEAAARQAGLIAMGTHGMSGIRRVLLGSTAEHVLHATTVPLLLHRPQAVRQALEEPATANETLRARDIMTPDPVTVGPD ATLEQVARLMLDRQIGAVPVVDADGRLLGLIREEDFLAQEKPIPFAAFRAPQLFGHWLNAEGIERIYAEARTMKAGDVAQ APAVTVTEDTPLSRIAQLMVERDVRHIPVVRDGKLVGIVTRHDVLKAVARQRSTSATTGHAS
Sequences:
>Translated_462_residues MAGPVVVPVLPTYLDPERVTHCAIPFGRAIAQRLGSELVLLSIVEVTESLRSYLEAEGEQVEQLVQRWLEQRRASLERLR NAISDVSCRIEVRLGEPAKEIVAYADASQAAVIVMSSHGRLGVARLLVGSVTFSVMQRARQPALVVRARVPVPAPNASVT FSPVLVPLDGSALAEEAIDTALDLLGQGSEPLQLHLFHVLAEEEDPARWERYLEAVAQRVRARGYPTSWSLGSGPVAETI AAEAAARQAGLIAMGTHGMSGIRRVLLGSTAEHVLHATTVPLLLHRPQAVRQALEEPATANETLRARDIMTPDPVTVGPD ATLEQVARLMLDRQIGAVPVVDADGRLLGLIREEDFLAQEKPIPFAAFRAPQLFGHWLNAEGIERIYAEARTMKAGDVAQ APAVTVTEDTPLSRIAQLMVERDVRHIPVVRDGKLVGIVTRHDVLKAVARQRSTSATTGHAS >Mature_461_residues AGPVVVPVLPTYLDPERVTHCAIPFGRAIAQRLGSELVLLSIVEVTESLRSYLEAEGEQVEQLVQRWLEQRRASLERLRN AISDVSCRIEVRLGEPAKEIVAYADASQAAVIVMSSHGRLGVARLLVGSVTFSVMQRARQPALVVRARVPVPAPNASVTF SPVLVPLDGSALAEEAIDTALDLLGQGSEPLQLHLFHVLAEEEDPARWERYLEAVAQRVRARGYPTSWSLGSGPVAETIA AEAAARQAGLIAMGTHGMSGIRRVLLGSTAEHVLHATTVPLLLHRPQAVRQALEEPATANETLRARDIMTPDPVTVGPDA TLEQVARLMLDRQIGAVPVVDADGRLLGLIREEDFLAQEKPIPFAAFRAPQLFGHWLNAEGIERIYAEARTMKAGDVAQA PAVTVTEDTPLSRIAQLMVERDVRHIPVVRDGKLVGIVTRHDVLKAVARQRSTSATTGHAS
Specific function: Unknown
COG id: COG0517
COG function: function code R; FOG: CBS domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50035; Mature: 49904
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGPVVVPVLPTYLDPERVTHCAIPFGRAIAQRLGSELVLLSIVEVTESLRSYLEAEGEQ CCCCEEEECCCCCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH VEQLVQRWLEQRRASLERLRNAISDVSCRIEVRLGEPAKEIVAYADASQAAVIVMSSHGR HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHCCCCCEEEEEEECCCC LGVARLLVGSVTFSVMQRARQPALVVRARVPVPAPNASVTFSPVLVPLDGSALAEEAIDT HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECEEEEECCCHHHHHHHHHH ALDLLGQGSEPLQLHLFHVLAEEEDPARWERYLEAVAQRVRARGYPTSWSLGSGPVAETI HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH AAEAAARQAGLIAMGTHGMSGIRRVLLGSTAEHVLHATTVPLLLHRPQAVRQALEEPATA HHHHHHHHCCEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC NETLRARDIMTPDPVTVGPDATLEQVARLMLDRQIGAVPVVDADGRLLGLIREEDFLAQE CCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEHHHHHHCC KPIPFAAFRAPQLFGHWLNAEGIERIYAEARTMKAGDVAQAPAVTVTEDTPLSRIAQLMV CCCCHHHHCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHH ERDVRHIPVVRDGKLVGIVTRHDVLKAVARQRSTSATTGHAS HHCHHHCCEEECCCEEEEEHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AGPVVVPVLPTYLDPERVTHCAIPFGRAIAQRLGSELVLLSIVEVTESLRSYLEAEGEQ CCCEEEECCCCCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH VEQLVQRWLEQRRASLERLRNAISDVSCRIEVRLGEPAKEIVAYADASQAAVIVMSSHGR HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHCCCCCEEEEEEECCCC LGVARLLVGSVTFSVMQRARQPALVVRARVPVPAPNASVTFSPVLVPLDGSALAEEAIDT HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEECEEEEECCCHHHHHHHHHH ALDLLGQGSEPLQLHLFHVLAEEEDPARWERYLEAVAQRVRARGYPTSWSLGSGPVAETI HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH AAEAAARQAGLIAMGTHGMSGIRRVLLGSTAEHVLHATTVPLLLHRPQAVRQALEEPATA HHHHHHHHCCEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC NETLRARDIMTPDPVTVGPDATLEQVARLMLDRQIGAVPVVDADGRLLGLIREEDFLAQE CCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEHHHHHHCC KPIPFAAFRAPQLFGHWLNAEGIERIYAEARTMKAGDVAQAPAVTVTEDTPLSRIAQLMV CCCCHHHHCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHH ERDVRHIPVVRDGKLVGIVTRHDVLKAVARQRSTSATTGHAS HHCHHHCCEEECCCEEEEEHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA