| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635597
Identifier: 221635597
GI number: 221635597
Start: 172172
End: 172999
Strand: Reverse
Name: 221635597
Synonym: trd_A0191
Alternate gene names: NA
Gene position: 172999-172172 (Counterclockwise)
Preceding gene: 221635598
Following gene: 221635596
Centisome position: 18.85
GC content: 67.15
Gene sequence:
>828_bases ATGGGTGGTAAGGCGTTCGTCGTCCTGGCCCAGAAAGAGCTCCGCGATGCGTTCCGCAACCGCTGGTTCATCGCCGATGC GCTCGCGCTCCTTATCCTGAGTCTCGCTCTGTCGCTGCTCGTTTCCCTGACCGGCGCTGCCAGCCCGGTCAGCGGCTTCG GGCGTACAGCCGCTAGTCTCGTCAACCTCATGCTCCTGCTCGTCCCCTTGATGGGGATCACGCTGGGAGCGCTGGCTATC GCGGGAGACCGGGAGCGGGGCGCGCTCGAGTTCTGGCTGACGCAGCCGGTCAGCACTGCGACCTTCTTTCTGGCCAAGGC GCTGGGCATGGGAGCAGCGCTGGCGGCCGCCGTTCTCGTCGGCTTCGGGGCGAGTTCCGTCGTGCTCCTCCTCGTTGGCG CCACCGATCCGTTCGCCTTCCTCGCCCTGGCCGGCTTGACCGTGCTCCTGGCGTGGGCTTCCCTCGCGCTTGGGCTCTTG CTCTCCAGTCGCTGTGCCCGCACCAGCACTGCCGTGAGCCTGGGCCTCGGTGCCTGGCTCCTCCTCGTCCTGCTCGGCGA CTTGGGGCTCATGGGAACTGCGCTGGCTGTCCGTCTCCCCCCAGCTTGGCTCCTAGCCATCGCGCTGGGCAACCCGGTGG AGACCTATCGTATCGCCGCATTGCGCTTGCTCGCTGGCACCTTGGAGTTGCTCGGACCGGCCGGGCTCTATGCTGACGAG CGGTTCGGGGCCAGTCTCTGGATCTTGCTGCCAACGACGCTCCTTCTCTGGATCGCCGCGGGCACCGGTTTCGCCTACAT CGTTCTGCGCCGGGAGGTGTCGCGATGA
Upstream 100 bases:
>100_bases GAGGTGCGTGTCCTCGTCACTCGGGATCGCAAAGCCGAGCCTTTCTTCCTGCTTGCCCGCGTCGGTATCCGCGTCCGCGA CTTCCGCTTGGAGGCCTCCG
Downstream 100 bases:
>100_bases CCCGTCGGCTGTTTCTCATGGTGCTCTTGGGAAGCCTCTCGGCAGGAGCATGCCGGCGTCAGAAAGCGCTCACCCCACCG GAGATCCGCCTCGGGCGCGA
Product: ABC-2 type transporter superfamily
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MGGKAFVVLAQKELRDAFRNRWFIADALALLILSLALSLLVSLTGAASPVSGFGRTAASLVNLMLLLVPLMGITLGALAI AGDRERGALEFWLTQPVSTATFFLAKALGMGAALAAAVLVGFGASSVVLLLVGATDPFAFLALAGLTVLLAWASLALGLL LSSRCARTSTAVSLGLGAWLLLVLLGDLGLMGTALAVRLPPAWLLAIALGNPVETYRIAALRLLAGTLELLGPAGLYADE RFGASLWILLPTTLLLWIAAGTGFAYIVLRREVSR
Sequences:
>Translated_275_residues MGGKAFVVLAQKELRDAFRNRWFIADALALLILSLALSLLVSLTGAASPVSGFGRTAASLVNLMLLLVPLMGITLGALAI AGDRERGALEFWLTQPVSTATFFLAKALGMGAALAAAVLVGFGASSVVLLLVGATDPFAFLALAGLTVLLAWASLALGLL LSSRCARTSTAVSLGLGAWLLLVLLGDLGLMGTALAVRLPPAWLLAIALGNPVETYRIAALRLLAGTLELLGPAGLYADE RFGASLWILLPTTLLLWIAAGTGFAYIVLRREVSR >Mature_274_residues GGKAFVVLAQKELRDAFRNRWFIADALALLILSLALSLLVSLTGAASPVSGFGRTAASLVNLMLLLVPLMGITLGALAIA GDRERGALEFWLTQPVSTATFFLAKALGMGAALAAAVLVGFGASSVVLLLVGATDPFAFLALAGLTVLLAWASLALGLLL SSRCARTSTAVSLGLGAWLLLVLLGDLGLMGTALAVRLPPAWLLAIALGNPVETYRIAALRLLAGTLELLGPAGLYADER FGASLWILLPTTLLLWIAAGTGFAYIVLRREVSR
Specific function: Involved in copper processing [H]
COG id: COG1277
COG function: function code R; ABC-type transport system involved in multi-copper enzyme maturation, permease component
Gene ontology:
Cell location: Membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28522; Mature: 28390
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGKAFVVLAQKELRDAFRNRWFIADALALLILSLALSLLVSLTGAASPVSGFGRTAASL CCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH VNLMLLLVPLMGITLGALAIAGDRERGALEFWLTQPVSTATFFLAKALGMGAALAAAVLV HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHH GFGASSVVLLLVGATDPFAFLALAGLTVLLAWASLALGLLLSSRCARTSTAVSLGLGAWL HCCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVLLGDLGLMGTALAVRLPPAWLLAIALGNPVETYRIAALRLLAGTLELLGPAGLYADE HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH RFGASLWILLPTTLLLWIAAGTGFAYIVLRREVSR HCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHCC >Mature Secondary Structure GGKAFVVLAQKELRDAFRNRWFIADALALLILSLALSLLVSLTGAASPVSGFGRTAASL CCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH VNLMLLLVPLMGITLGALAIAGDRERGALEFWLTQPVSTATFFLAKALGMGAALAAAVLV HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHH GFGASSVVLLLVGATDPFAFLALAGLTVLLAWASLALGLLLSSRCARTSTAVSLGLGAWL HCCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVLLGDLGLMGTALAVRLPPAWLLAIALGNPVETYRIAALRLLAGTLELLGPAGLYADE HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH RFGASLWILLPTTLLLWIAAGTGFAYIVLRREVSR HCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2170125 [H]