Click here to switch to the map view.

The map label for this gene is 221635517

Identifier: 221635517

GI number: 221635517

Start: 107516

End: 108463

Strand: Reverse

Name: 221635517

Synonym: trd_A0111

Alternate gene names: NA

Gene position: 108463-107516 (Counterclockwise)

Preceding gene: 221635518

Following gene: 221635516

Centisome position: 11.82

GC content: 70.57

Gene sequence:

>948_bases
ATGCGTGAGCGACCGCGACCCGACCAGCCGCGCGGCAACGGTCGTCCACCGCAACGCGGTGAAGCGCGACCACGTTCGGG
GGGCCGCTCCGGCCCACCACGCGACCGTGATCGATCGGCCGAGCACGCCGACGGCGAGCGAGGGCGGCCGCACCCGCTCC
TCCCGTCCGCCACGCGGATGCTCTGGAACAGCGTCCGGAACCAGGTGGCGAACCCCGGGCTCCTCTTCGATCGCTTCGCG
CCGGAAGCAGCCGTCTTCGGCGACCGTACCGAGGCGACACCGCGCCGCGACTTCCTGCGCGAGGTGATCGCAGCAGCCGA
GCGGCTCGCCAAGGACGCTCTCGCCGAGCAGATCCTGGTGCGCTGGGAAGCAACCGTGCGCGCAGCCGGAGCGGAACCAT
GTTCCGTTGAACTGGAGTCGCGCCTGGTCAGCGGCCTCGGCGCCCATGGCCCGCTCGAGATCGGTTTCCGCTTCGACCGG
CTCGGCTTTCCCGTGCTGCCGGGGAGCGGTCTCAAGGGTGTCGCCCGTGCCTACGCCCATCTCGTCGAGCGACGCAACGA
GTCGGATCCCGACTTCCTCGCCGTCTTCGGCCGCGTACCCCGCTCAGGAGAAGCGCACGAGGTCGGCCAGGCCGGTGCGC
TCGTCTTCTTCGACGCCTACCCCGAACCTGGCTGGCGCCTCGAGCTCGACGTGATGACGCCCCACTATCCGGACTATTAC
AGCGGGAAGGAGCCGCCGACCCCCTGGCAGAACCCGAAGCCGATCACCTTCCTGGCTGTCGCGCCGGGCACGCGCTACCG
CCTGGCGATCGGGCTCCGCCAGGGGGTGAGCGATCCCGATGGCCGACTCCGGCAGCTCGCTCTGGGCTGGCTCCGCAACG
GGTTGGCCCAGCTCGGTTTCGGGGCCAAGACGACGAGCGGCTACGGCGTGTTCCGGAACAGGGAGTGA

Upstream 100 bases:

>100_bases
GCTAGCGTCGCCGAGTACCGCCGCGCCACGCTGGAGGCGCTCGCCTTCCTCGCCTGGCTCAAGCGGTTCGCCGAAGCCGA
GCTGGTGAAGGAGGGAGCCG

Downstream 100 bases:

>100_bases
ACGATGAACCAGCCAGTGCGTCGCGTCCTCGTCCTCAACGTCGGGAAGCCGACGGACGGTAACGTCGCCGATCGACCGGA
AGCCTACGCCTTGCGCGAGG

Product: crispr-associated protein, Cmr6 family

Products: NA

Alternate protein names: CRISPR-Associated RAMP Cmr6 Family Protein; Cmr6 Family CRISPR-Associated RAMP Protein; Cytoplasmic Protein; CRISPR-Associated Cmr5 Family Protein; CRISPR-Associated Protein; Crispr-Associated Protein Cmr6 Family; Crispr-Associated Ramp Protein Cmr6 Family

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MRERPRPDQPRGNGRPPQRGEARPRSGGRSGPPRDRDRSAEHADGERGRPHPLLPSATRMLWNSVRNQVANPGLLFDRFA
PEAAVFGDRTEATPRRDFLREVIAAAERLAKDALAEQILVRWEATVRAAGAEPCSVELESRLVSGLGAHGPLEIGFRFDR
LGFPVLPGSGLKGVARAYAHLVERRNESDPDFLAVFGRVPRSGEAHEVGQAGALVFFDAYPEPGWRLELDVMTPHYPDYY
SGKEPPTPWQNPKPITFLAVAPGTRYRLAIGLRQGVSDPDGRLRQLALGWLRNGLAQLGFGAKTTSGYGVFRNRE

Sequences:

>Translated_315_residues
MRERPRPDQPRGNGRPPQRGEARPRSGGRSGPPRDRDRSAEHADGERGRPHPLLPSATRMLWNSVRNQVANPGLLFDRFA
PEAAVFGDRTEATPRRDFLREVIAAAERLAKDALAEQILVRWEATVRAAGAEPCSVELESRLVSGLGAHGPLEIGFRFDR
LGFPVLPGSGLKGVARAYAHLVERRNESDPDFLAVFGRVPRSGEAHEVGQAGALVFFDAYPEPGWRLELDVMTPHYPDYY
SGKEPPTPWQNPKPITFLAVAPGTRYRLAIGLRQGVSDPDGRLRQLALGWLRNGLAQLGFGAKTTSGYGVFRNRE
>Mature_315_residues
MRERPRPDQPRGNGRPPQRGEARPRSGGRSGPPRDRDRSAEHADGERGRPHPLLPSATRMLWNSVRNQVANPGLLFDRFA
PEAAVFGDRTEATPRRDFLREVIAAAERLAKDALAEQILVRWEATVRAAGAEPCSVELESRLVSGLGAHGPLEIGFRFDR
LGFPVLPGSGLKGVARAYAHLVERRNESDPDFLAVFGRVPRSGEAHEVGQAGALVFFDAYPEPGWRLELDVMTPHYPDYY
SGKEPPTPWQNPKPITFLAVAPGTRYRLAIGLRQGVSDPDGRLRQLALGWLRNGLAQLGFGAKTTSGYGVFRNRE

Specific function: Unknown

COG id: COG1604

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34763; Mature: 34763

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRERPRPDQPRGNGRPPQRGEARPRSGGRSGPPRDRDRSAEHADGERGRPHPLLPSATRM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
LWNSVRNQVANPGLLFDRFAPEAAVFGDRTEATPRRDFLREVIAAAERLAKDALAEQILV
HHHHHHHHHCCCCEEHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWEATVRAAGAEPCSVELESRLVSGLGAHGPLEIGFRFDRLGFPVLPGSGLKGVARAYAH
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEECEEECCCCCCCCCCCCHHHHHHHHHH
LVERRNESDPDFLAVFGRVPRSGEAHEVGQAGALVFFDAYPEPGWRLELDVMTPHYPDYY
HHHHCCCCCCCHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCCC
SGKEPPTPWQNPKPITFLAVAPGTRYRLAIGLRQGVSDPDGRLRQLALGWLRNGLAQLGF
CCCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
GAKTTSGYGVFRNRE
CCCCCCCCCEECCCC
>Mature Secondary Structure
MRERPRPDQPRGNGRPPQRGEARPRSGGRSGPPRDRDRSAEHADGERGRPHPLLPSATRM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
LWNSVRNQVANPGLLFDRFAPEAAVFGDRTEATPRRDFLREVIAAAERLAKDALAEQILV
HHHHHHHHHCCCCEEHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWEATVRAAGAEPCSVELESRLVSGLGAHGPLEIGFRFDRLGFPVLPGSGLKGVARAYAH
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEECEEECCCCCCCCCCCCHHHHHHHHHH
LVERRNESDPDFLAVFGRVPRSGEAHEVGQAGALVFFDAYPEPGWRLELDVMTPHYPDYY
HHHHCCCCCCCHHHHHHCCCCCCCHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCCC
SGKEPPTPWQNPKPITFLAVAPGTRYRLAIGLRQGVSDPDGRLRQLALGWLRNGLAQLGF
CCCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
GAKTTSGYGVFRNRE
CCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA