Click here to switch to the map view.

The map label for this gene is yxkH [H]

Identifier: 221635506

GI number: 221635506

Start: 88190

End: 89530

Strand: Reverse

Name: yxkH [H]

Synonym: trd_A0100

Alternate gene names: 221635506

Gene position: 89530-88190 (Counterclockwise)

Preceding gene: 221635507

Following gene: 221635501

Centisome position: 9.76

GC content: 68.08

Gene sequence:

>1341_bases
ATGCGGTATCTCCGTTTCCTCTGGATCTGTTCGCTCGTCCTCGGCCTGCTCGCCGCCGTCCAGCCAGCGCGCGCCGCTGG
CCCACCGTCCGTCGTCTACTTCCCCACCACGGGCCATCACGTCGCCGAACCCTTCCTCTCCTTCTGGCGCGCCCACGGTG
GACTCCGCATCCTCGGCTATCCCCTGAGCGAGGCGCACGAGCGGGACGGCCTACTCGTCCAGTACTTCGAGCGGGCTCGC
CTGGAGGCATCGCTGGGGTGCCTGGGGAAGACGGACTGCCCGGTGCAACTCACCCGTGTCGCTGCGCACCTCACTGCTGG
CCGAACCGATCCCGCGTTCGCAGCGCTCTCTCTCGAGACGCGACCTCCGGATACGCCGCTTCGCCGCTTCTTCCCGGAAA
CCGGCCATTTCCTCGCCAACGGTTTCCTCCGCTTCTGGCTCCGCAATGGCGGCCTCCCCGTCTTCGGTTACCCGATCTCC
GAGGAATTCACCGAAGTCGATCCGGAAACCGGCCAGCCTGTCACCGTCCAGTACTTCGAGCGCGCCCGCTTCTCCTGGCA
TCCCGAGGCGCTCGGCACGCTCTGGGAGGTCCAGCTGGCTCGCCTCGGTGCCGAGCTCGCAGCCCGCGATGGCGTCGAGA
CCGCTCCCGTCTCCCGCCAGCCCGGCGTGCCCGACTACGATCCGGCCCTCTTCCCGCGCGCTTTCCGCTTGCCGGTGCTC
ATGTACCACGATATCGGCGAGCCAGCCGCCCGCTACCGCATCCCCCTCTGGCGCCTCGAGCAGCAACTCGATTGGCTCCT
CGCCAACGGCTACGTCACCATCTCGCTCGAACAGGCTTTCGAGGCGCTCCTGGCCGATGGTCCATTGCCCGAACGAGCGG
TCGTCATCACCTTCGACGATGGTCCGCGCAGCCAACTCGCCGCTGCCCGCGCGCTCGCTGCCCGCAACATGACAGCGACC
TTCTTCGTCCTGCCTGGCCGGAGTGCGCTCGGCGCAGCCGAACTCCGCGAACTCCGTTCCATGGGCCACGAGATCGGCTC
GCATTCCATGACCCACCGCGCCATGACTCGCCTCGACGATGGCGCCGCCCGCTGGGAAGCCGAGACCAGTCGCCGTACGC
TCGAGTCGTGGCTCGGTGAGCCGGTCCGCTTCTTCGCCTACCCGGGGGGCGATTGGAACCCACGAGTCGCCAGCATCGTC
AGCACTACCGGCTACTTCGGCGCCATGGCCGCCTGGGGCGGAACACGGTGGACGCGCGAGAAGCGCTGGGTCGAGCCGCG
CGTCGAGATCGACGGACGCATCTCTCTCGACCGCTTCGCCTGGTACGTCGAGCGCTTCTGA

Upstream 100 bases:

>100_bases
TCACTCCCCCTTCGTAACCCGTTCACGAGTTCGCTCGTTCATCTGGTAGAAAGGCACCGCGGAGCGTTCGTCGGTGCTGG
GTGCTGGGAAGAGGAGGACA

Downstream 100 bases:

>100_bases
CACTCGCCGTCCGCCTCCTGTATGTCAAACGAGGCCGGCTGGGTCGTTCTCCCCAGCCGGCCTGCGTCCCCTTCCCTTCC
CGGCGCAGGATGGTATTCAC

Product: VanW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MRYLRFLWICSLVLGLLAAVQPARAAGPPSVVYFPTTGHHVAEPFLSFWRAHGGLRILGYPLSEAHERDGLLVQYFERAR
LEASLGCLGKTDCPVQLTRVAAHLTAGRTDPAFAALSLETRPPDTPLRRFFPETGHFLANGFLRFWLRNGGLPVFGYPIS
EEFTEVDPETGQPVTVQYFERARFSWHPEALGTLWEVQLARLGAELAARDGVETAPVSRQPGVPDYDPALFPRAFRLPVL
MYHDIGEPAARYRIPLWRLEQQLDWLLANGYVTISLEQAFEALLADGPLPERAVVITFDDGPRSQLAAARALAARNMTAT
FFVLPGRSALGAAELRELRSMGHEIGSHSMTHRAMTRLDDGAARWEAETSRRTLESWLGEPVRFFAYPGGDWNPRVASIV
STTGYFGAMAAWGGTRWTREKRWVEPRVEIDGRISLDRFAWYVERF

Sequences:

>Translated_446_residues
MRYLRFLWICSLVLGLLAAVQPARAAGPPSVVYFPTTGHHVAEPFLSFWRAHGGLRILGYPLSEAHERDGLLVQYFERAR
LEASLGCLGKTDCPVQLTRVAAHLTAGRTDPAFAALSLETRPPDTPLRRFFPETGHFLANGFLRFWLRNGGLPVFGYPIS
EEFTEVDPETGQPVTVQYFERARFSWHPEALGTLWEVQLARLGAELAARDGVETAPVSRQPGVPDYDPALFPRAFRLPVL
MYHDIGEPAARYRIPLWRLEQQLDWLLANGYVTISLEQAFEALLADGPLPERAVVITFDDGPRSQLAAARALAARNMTAT
FFVLPGRSALGAAELRELRSMGHEIGSHSMTHRAMTRLDDGAARWEAETSRRTLESWLGEPVRFFAYPGGDWNPRVASIV
STTGYFGAMAAWGGTRWTREKRWVEPRVEIDGRISLDRFAWYVERF
>Mature_446_residues
MRYLRFLWICSLVLGLLAAVQPARAAGPPSVVYFPTTGHHVAEPFLSFWRAHGGLRILGYPLSEAHERDGLLVQYFERAR
LEASLGCLGKTDCPVQLTRVAAHLTAGRTDPAFAALSLETRPPDTPLRRFFPETGHFLANGFLRFWLRNGGLPVFGYPIS
EEFTEVDPETGQPVTVQYFERARFSWHPEALGTLWEVQLARLGAELAARDGVETAPVSRQPGVPDYDPALFPRAFRLPVL
MYHDIGEPAARYRIPLWRLEQQLDWLLANGYVTISLEQAFEALLADGPLPERAVVITFDDGPRSQLAAARALAARNMTAT
FFVLPGRSALGAAELRELRSMGHEIGSHSMTHRAMTRLDDGAARWEAETSRRTLESWLGEPVRFFAYPGGDWNPRVASIV
STTGYFGAMAAWGGTRWTREKRWVEPRVEIDGRISLDRFAWYVERF

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 50080; Mature: 50080

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLRFLWICSLVLGLLAAVQPARAAGPPSVVYFPTTGHHVAEPFLSFWRAHGGLRILGY
CHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
PLSEAHERDGLLVQYFERARLEASLGCLGKTDCPVQLTRVAAHLTAGRTDPAFAALSLET
CHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC
RPPDTPLRRFFPETGHFLANGFLRFWLRNGGLPVFGYPISEEFTEVDPETGQPVTVQYFE
CCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCCEEHHHHH
RARFSWHPEALGTLWEVQLARLGAELAARDGVETAPVSRQPGVPDYDPALFPRAFRLPVL
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEE
MYHDIGEPAARYRIPLWRLEQQLDWLLANGYVTISLEQAFEALLADGPLPERAVVITFDD
EEECCCCHHHHHCCHHHHHHHHHHHEEECCEEEEEHHHHHHHHHCCCCCCCCEEEEEECC
GPRSQLAAARALAARNMTATFFVLPGRSALGAAELRELRSMGHEIGSHSMTHRAMTRLDD
CCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
GAARWEAETSRRTLESWLGEPVRFFAYPGGDWNPRVASIVSTTGYFGAMAAWGGTRWTRE
CHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCH
KRWVEPRVEIDGRISLDRFAWYVERF
HHCCCCCCCCCCEEEHHHHHHHHHCC
>Mature Secondary Structure
MRYLRFLWICSLVLGLLAAVQPARAAGPPSVVYFPTTGHHVAEPFLSFWRAHGGLRILGY
CHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEC
PLSEAHERDGLLVQYFERARLEASLGCLGKTDCPVQLTRVAAHLTAGRTDPAFAALSLET
CHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC
RPPDTPLRRFFPETGHFLANGFLRFWLRNGGLPVFGYPISEEFTEVDPETGQPVTVQYFE
CCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCCEEHHHHH
RARFSWHPEALGTLWEVQLARLGAELAARDGVETAPVSRQPGVPDYDPALFPRAFRLPVL
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEE
MYHDIGEPAARYRIPLWRLEQQLDWLLANGYVTISLEQAFEALLADGPLPERAVVITFDD
EEECCCCHHHHHCCHHHHHHHHHHHEEECCEEEEEHHHHHHHHHCCCCCCCCEEEEEECC
GPRSQLAAARALAARNMTATFFVLPGRSALGAAELRELRSMGHEIGSHSMTHRAMTRLDD
CCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
GAARWEAETSRRTLESWLGEPVRFFAYPGGDWNPRVASIVSTTGYFGAMAAWGGTRWTRE
CHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCH
KRWVEPRVEIDGRISLDRFAWYVERF
HHCCCCCCCCCCEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]