| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635500
Identifier: 221635500
GI number: 221635500
Start: 82374
End: 82814
Strand: Reverse
Name: 221635500
Synonym: trd_A0094
Alternate gene names: NA
Gene position: 82814-82374 (Counterclockwise)
Preceding gene: 221635501
Following gene: 221635499
Centisome position: 9.02
GC content: 65.76
Gene sequence:
>441_bases ATGAGCGATGAGCAGATGAATGGCCCGGCAGACGCAAGGCAGCCTGATCGCCGCAAGCAGCGGCGCACCATGCGACGGAG CGGTGCGGTGGACGGTGAAGAAGCCGTCCGTGCCGCCATCACCGCGATGCCCGAACCGTGGCGCTCCATCGCTGAGCGCC TCGACTTCGTGATCCGCAGCACTGCACCACAACTCACGCCGCGACTCTGGTACGGTCTCCCCGCGTACGCGCTGGAGAAA GCTGTCGTCTGCTTCTTCCGCAGTCCGCAGACGTTCGGCGAACGCTATCTCACCTTCGGTTTCACCGATAAAGCCCAGCT CGACGAGGGCACCTGGTGGCCGGTCGCGTTCGCGATCACCGAACTCGGTCCGGCCGAAGAGGCTCGCGTGCGCGAGTTGG TGCAGCGTGCTGTCGGAGCGACCGACCGCGAGCCAAGGTGA
Upstream 100 bases:
>100_bases CGGTGACACCGTTCCTGCTTCCGCTGTCGACTCGCCTGGTGCCGACCCGCCTTCCCTGCTACGCTGCTCAAGAGCTGATG GCCTGTCCGAGGAGGGCACG
Downstream 100 bases:
>100_bases GCATCGGCTGGTCCGCGCCAGCTGTGCTCGGGCGCTCGTCCGCCAGGGAAATCGGCGCGACGCACCAGGAGAGACCGGTG TCCGACCCGTTGTCCCTCTC
Product: domain of unknown function
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MSDEQMNGPADARQPDRRKQRRTMRRSGAVDGEEAVRAAITAMPEPWRSIAERLDFVIRSTAPQLTPRLWYGLPAYALEK AVVCFFRSPQTFGERYLTFGFTDKAQLDEGTWWPVAFAITELGPAEEARVRELVQRAVGATDREPR
Sequences:
>Translated_146_residues MSDEQMNGPADARQPDRRKQRRTMRRSGAVDGEEAVRAAITAMPEPWRSIAERLDFVIRSTAPQLTPRLWYGLPAYALEK AVVCFFRSPQTFGERYLTFGFTDKAQLDEGTWWPVAFAITELGPAEEARVRELVQRAVGATDREPR >Mature_145_residues SDEQMNGPADARQPDRRKQRRTMRRSGAVDGEEAVRAAITAMPEPWRSIAERLDFVIRSTAPQLTPRLWYGLPAYALEKA VVCFFRSPQTFGERYLTFGFTDKAQLDEGTWWPVAFAITELGPAEEARVRELVQRAVGATDREPR
Specific function: Unknown
COG id: COG5646
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16615; Mature: 16484
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDEQMNGPADARQPDRRKQRRTMRRSGAVDGEEAVRAAITAMPEPWRSIAERLDFVIRS CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH TAPQLTPRLWYGLPAYALEKAVVCFFRSPQTFGERYLTFGFTDKAQLDEGTWWPVAFAIT CCCHHCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHH ELGPAEEARVRELVQRAVGATDREPR HCCCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SDEQMNGPADARQPDRRKQRRTMRRSGAVDGEEAVRAAITAMPEPWRSIAERLDFVIRS CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH TAPQLTPRLWYGLPAYALEKAVVCFFRSPQTFGERYLTFGFTDKAQLDEGTWWPVAFAIT CCCHHCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHH ELGPAEEARVRELVQRAVGATDREPR HCCCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA