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The map label for this gene is 221635425

Identifier: 221635425

GI number: 221635425

Start: 16856

End: 17257

Strand: Reverse

Name: 221635425

Synonym: trd_A0019

Alternate gene names: NA

Gene position: 17257-16856 (Counterclockwise)

Preceding gene: 221635433

Following gene: 221635424

Centisome position: 1.88

GC content: 66.92

Gene sequence:

>402_bases
GTGGAACGGAGTCGCGACTGGCCCGAGCGGGCAGCGGGCGATCTCGCGCTAGCCCGTCACGCTTTCGCTGGCGGTTTCTT
CGACTGGACAGTCTTCGCAGCCCAGCAAGCAGCCGAGAAAGCGGTCAAGGCTGCGCTCCAACGACTCGGGGCGGAAGCCT
GGGGCTATGCGGTGGCCGGGCTGCTCCGGGCGCTGGCCGAGCGCTTGCCGGTTCCCGAAGAACTCATCGCTGCCGCGCTC
GAACTCGACAAGGGATACATCGCGGCTCGCAATCCCGATGCGCATCCAGCAGGCGCTCCCCGCATCCTCTACACGCGAGC
GGAAGCGGAAAGGGCTCTCGCCCATGCCGAACGAATCCTCGACTTCTGTGCGCGTCTCGTGGCCCGACCTGACGCTTCCT
GA

Upstream 100 bases:

>100_bases
TGCCAACTCCACGCTCGTGTCTCCGGACAGTGCAACGCTGCCCGGGTGCGGGTGTCGTGCCGGTCGACCACTCTGCTATC
CTCGACGCCGGAGGATGCAC

Downstream 100 bases:

>100_bases
ACTCGTGGCTCGGCTCGAGCAGGCTGCCCGCGCGCTGGCAGAGGAGTTGCCGCTGCGCCGGCTCGTCCTCTTCGGATCCT
GGGTCCAAGGTCGCGCCACA

Product: hepn domain protein

Products: NA

Alternate protein names: Hepn Domain Protein; HEPN Domain Protein; Hepn Domain

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MERSRDWPERAAGDLALARHAFAGGFFDWTVFAAQQAAEKAVKAALQRLGAEAWGYAVAGLLRALAERLPVPEELIAAAL
ELDKGYIAARNPDAHPAGAPRILYTRAEAERALAHAERILDFCARLVARPDAS

Sequences:

>Translated_133_residues
MERSRDWPERAAGDLALARHAFAGGFFDWTVFAAQQAAEKAVKAALQRLGAEAWGYAVAGLLRALAERLPVPEELIAAAL
ELDKGYIAARNPDAHPAGAPRILYTRAEAERALAHAERILDFCARLVARPDAS
>Mature_133_residues
MERSRDWPERAAGDLALARHAFAGGFFDWTVFAAQQAAEKAVKAALQRLGAEAWGYAVAGLLRALAERLPVPEELIAAAL
ELDKGYIAARNPDAHPAGAPRILYTRAEAERALAHAERILDFCARLVARPDAS

Specific function: Unknown

COG id: COG2250

COG function: function code S; Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14389; Mature: 14389

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50910 HEPN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSRDWPERAAGDLALARHAFAGGFFDWTVFAAQQAAEKAVKAALQRLGAEAWGYAVAG
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LLRALAERLPVPEELIAAALELDKGYIAARNPDAHPAGAPRILYTRAEAERALAHAERIL
HHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHH
DFCARLVARPDAS
HHHHHHHHCCCCC
>Mature Secondary Structure
MERSRDWPERAAGDLALARHAFAGGFFDWTVFAAQQAAEKAVKAALQRLGAEAWGYAVAG
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LLRALAERLPVPEELIAAALELDKGYIAARNPDAHPAGAPRILYTRAEAERALAHAERIL
HHHHHHHHCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHH
DFCARLVARPDAS
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA