| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633829
Identifier: 221633829
GI number: 221633829
Start: 1867971
End: 1868615
Strand: Reverse
Name: 221633829
Synonym: trd_1856
Alternate gene names: NA
Gene position: 1868615-1867971 (Counterclockwise)
Preceding gene: 221633832
Following gene: 221633828
Centisome position: 93.29
GC content: 64.03
Gene sequence:
>645_bases GTGTTGATCCGGTTCCTCCTGGCTTTCGGATGGCTCATCGCGGTACCGCTCGCCTGGGCCGCAGCGATCTGGTTGATCGT CGCGCGCAATGTGGGCACGATCTCCGACTTCTGGGCACCCATTCGCCTGCTCACGGCGGCCGCTTTTCTGGCGGCGCCAG CCCTCACCTTCCTGCCGCTCGAACGCGTGACGCGCGTTCCCTTCTTGAGCATCGAGGCGATCGCGGGATGGTCGACGACG CTCTTCGTCTGGACCTTCGTCGATCCGTCTCGACTCCGTAGTCCACTCGCGATCTTGATCCTGCTGCTCCCGCTCCTCGT CGCCGTCTCGACGCTCTTCACCGTGCTGAGTGCCGCGCTCGAACATCGCTGGGCAACGCGGTCCGGAAAAGAGATCGATC CCCTGCGCGCCCGGCGACGCGGCTATGTCCTGGGGCTCTTCGTCGTCGGCTGTCTGCTTTTGCATTCTCTGGAGGCGCTG ACGCTCATCAATGCCGGTATGCTCGGCGTGATCGCTCTCCTGGCCGAAGTGATGGCCATGACCTGGTTCGCACCGGTTCG AGAAACGGGGGCACGACACAGTGGCGCGATTGGGCATCGACGTCGGTGGCACGAATACCGACGCGGTCCTTTTGGACCGC AGTGA
Upstream 100 bases:
>100_bases TCGACGCGGATATCGAGCGTCATGCTCGCCTCCCACGAGCGAGTATACCGACTCTCTCGGGTCGGACATCCGGTGCTAGA CTGCGGTGGGAGGGAAGCGC
Downstream 100 bases:
>100_bases GGTCCTCGCCTGGGCCAAGGAACCGACGACACCGGACGTGAGCACCGGCATCTTGCGCGTGGTACGCGATGTCCTGGCGC AGGCTCGGATCGCCCCGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MLIRFLLAFGWLIAVPLAWAAAIWLIVARNVGTISDFWAPIRLLTAAAFLAAPALTFLPLERVTRVPFLSIEAIAGWSTT LFVWTFVDPSRLRSPLAILILLLPLLVAVSTLFTVLSAALEHRWATRSGKEIDPLRARRRGYVLGLFVVGCLLLHSLEAL TLINAGMLGVIALLAEVMAMTWFAPVRETGARHSGAIGHRRRWHEYRRGPFGPQ
Sequences:
>Translated_214_residues MLIRFLLAFGWLIAVPLAWAAAIWLIVARNVGTISDFWAPIRLLTAAAFLAAPALTFLPLERVTRVPFLSIEAIAGWSTT LFVWTFVDPSRLRSPLAILILLLPLLVAVSTLFTVLSAALEHRWATRSGKEIDPLRARRRGYVLGLFVVGCLLLHSLEAL TLINAGMLGVIALLAEVMAMTWFAPVRETGARHSGAIGHRRRWHEYRRGPFGPQ >Mature_214_residues MLIRFLLAFGWLIAVPLAWAAAIWLIVARNVGTISDFWAPIRLLTAAAFLAAPALTFLPLERVTRVPFLSIEAIAGWSTT LFVWTFVDPSRLRSPLAILILLLPLLVAVSTLFTVLSAALEHRWATRSGKEIDPLRARRRGYVLGLFVVGCLLLHSLEAL TLINAGMLGVIALLAEVMAMTWFAPVRETGARHSGAIGHRRRWHEYRRGPFGPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23726; Mature: 23726
Theoretical pI: Translated: 12.03; Mature: 12.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIRFLLAFGWLIAVPLAWAAAIWLIVARNVGTISDFWAPIRLLTAAAFLAAPALTFLPL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ERVTRVPFLSIEAIAGWSTTLFVWTFVDPSRLRSPLAILILLLPLLVAVSTLFTVLSAAL HHHHHCCCHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EHRWATRSGKEIDPLRARRRGYVLGLFVVGCLLLHSLEALTLINAGMLGVIALLAEVMAM HHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TWFAPVRETGARHSGAIGHRRRWHEYRRGPFGPQ HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLIRFLLAFGWLIAVPLAWAAAIWLIVARNVGTISDFWAPIRLLTAAAFLAAPALTFLPL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ERVTRVPFLSIEAIAGWSTTLFVWTFVDPSRLRSPLAILILLLPLLVAVSTLFTVLSAAL HHHHHCCCHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EHRWATRSGKEIDPLRARRRGYVLGLFVVGCLLLHSLEALTLINAGMLGVIALLAEVMAM HHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH TWFAPVRETGARHSGAIGHRRRWHEYRRGPFGPQ HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA