| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633827
Identifier: 221633827
GI number: 221633827
Start: 1865350
End: 1866486
Strand: Reverse
Name: 221633827
Synonym: trd_1853
Alternate gene names: NA
Gene position: 1866486-1865350 (Counterclockwise)
Preceding gene: 221633828
Following gene: 221633825
Centisome position: 93.18
GC content: 67.28
Gene sequence:
>1137_bases ATGTGGGAGTTGGACGAGGAGAAGCTGGAGGCCATCACCATCGGGGCAGGCATCTTAGGTACCGGCGGAGGCGGCAATCC CTATTACGGCAAGCTCTATGTCCGGCGCTTGCTGCGGGAAGGACGACGCGTCACCATCGTTTCTCCCGAAGACGTTCCAG ACGATGCCTTGGTCGTCTCGGTCGGGGGAATGGGTGCACCGACGATCGGCATCGAGCGGATCCATCGCGGCGACGAACCA CTGGCAGCCTTGCGCGCGCTGGAGGCGCACCTCGGCCGGCGCGCGACCCATCTCGTTCCGGGGGAGATCGGGGGAGCGAA CGCGCTCCGGCCGATGGCCGTCGCGGCCCTCGCTGATCTGCCAGTGGTGGACGGTGACGGGATGGGACGCGCCTTCCCGG AACTCCAGATGGATACCTTCGCGATTTACGGAGTCCCCGCGACACCGGCGGCCTTGGCCGATATCTTTCACAACCTCGTC GTCTTTCCCTGGCTGCAGGACGCCGTGACGCTGGAACGCTACGCTCGGGCCGTCACCGTTCAGATGGGCGGGGCAGCCGG CTTCGCCTTTCCCGCCATGAGCGGGGCGGACCTGCGCCGGACCGTGATTCCCTACACGGTGACGTTGGCCCTTCGACTCG GGGAGGCAGTGCTCCGAGCCCGCCGCGAGCACCATGACCCGATCGCCGCAGCGCTCGCGGTCACCGGTGGGTGCGTCCTC TTCCGCGGCAAGGTGATCGACGTGGAGCGCCGGTTAGCCGCCGGGTTCGCCCGGGGGGTCGTTCGGCTCGAGGGGCTCGC CGAGGACCGTGGGAGCGAACTCCGCATCGATTTCCAGAACGAGAACTTGATCGCTCGCCGCGACGGTGAAGTCCTCGCGG TCGTCCCGGACCTCATCTGTCTCGTCGATCAGGAGACAGCCGAACCAGTCACGACCGAGGTGGTTCGCTACGGCCTGCGC GTCGTGGTCCTCGGTATCCCAGCACCAACACTGCTGCGGACACCGGAGGCACTCGCGGTGGTCGGGCCACAGGCCTTCGG CTATCGCGACGTCGTGTACCGTCCGTTACCGGGCCTCTACGGGGGAGACCGCATCGCGGCCGAGCGACGCGCTGATGCGC TCAGGAAACCGCGTTGA
Upstream 100 bases:
>100_bases AGCGTGGTGGAGGTCGAAGAAGTACCCATTGCGTATCTGCCCTCGAACGCCGTCCGGATCCGCATCAAAGCAGTTGGGGA TCTCCGAGGAGGCTGAGGTG
Downstream 100 bases:
>100_bases CGAGCATCATGCGCAAGAGATAGATCAGCAACAGGGCGACGAGCGGCGAGAAATCGATGAAGCCGGTGCGGGGCATGACG CGGCGGATCGGTGCGATGAT
Product: putative hydantoinase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MWELDEEKLEAITIGAGILGTGGGGNPYYGKLYVRRLLREGRRVTIVSPEDVPDDALVVSVGGMGAPTIGIERIHRGDEP LAALRALEAHLGRRATHLVPGEIGGANALRPMAVAALADLPVVDGDGMGRAFPELQMDTFAIYGVPATPAALADIFHNLV VFPWLQDAVTLERYARAVTVQMGGAAGFAFPAMSGADLRRTVIPYTVTLALRLGEAVLRARREHHDPIAAALAVTGGCVL FRGKVIDVERRLAAGFARGVVRLEGLAEDRGSELRIDFQNENLIARRDGEVLAVVPDLICLVDQETAEPVTTEVVRYGLR VVVLGIPAPTLLRTPEALAVVGPQAFGYRDVVYRPLPGLYGGDRIAAERRADALRKPR
Sequences:
>Translated_378_residues MWELDEEKLEAITIGAGILGTGGGGNPYYGKLYVRRLLREGRRVTIVSPEDVPDDALVVSVGGMGAPTIGIERIHRGDEP LAALRALEAHLGRRATHLVPGEIGGANALRPMAVAALADLPVVDGDGMGRAFPELQMDTFAIYGVPATPAALADIFHNLV VFPWLQDAVTLERYARAVTVQMGGAAGFAFPAMSGADLRRTVIPYTVTLALRLGEAVLRARREHHDPIAAALAVTGGCVL FRGKVIDVERRLAAGFARGVVRLEGLAEDRGSELRIDFQNENLIARRDGEVLAVVPDLICLVDQETAEPVTTEVVRYGLR VVVLGIPAPTLLRTPEALAVVGPQAFGYRDVVYRPLPGLYGGDRIAAERRADALRKPR >Mature_378_residues MWELDEEKLEAITIGAGILGTGGGGNPYYGKLYVRRLLREGRRVTIVSPEDVPDDALVVSVGGMGAPTIGIERIHRGDEP LAALRALEAHLGRRATHLVPGEIGGANALRPMAVAALADLPVVDGDGMGRAFPELQMDTFAIYGVPATPAALADIFHNLV VFPWLQDAVTLERYARAVTVQMGGAAGFAFPAMSGADLRRTVIPYTVTLALRLGEAVLRARREHHDPIAAALAVTGGCVL FRGKVIDVERRLAAGFARGVVRLEGLAEDRGSELRIDFQNENLIARRDGEVLAVVPDLICLVDQETAEPVTTEVVRYGLR VVVLGIPAPTLLRTPEALAVVGPQAFGYRDVVYRPLPGLYGGDRIAAERRADALRKPR
Specific function: Unknown
COG id: COG3535
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40533; Mature: 40533
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWELDEEKLEAITIGAGILGTGGGGNPYYGKLYVRRLLREGRRVTIVSPEDVPDDALVVS CCCCCCHHEEEEEECCCEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEE VGGMGAPTIGIERIHRGDEPLAALRALEAHLGRRATHLVPGEIGGANALRPMAVAALADL ECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCC PVVDGDGMGRAFPELQMDTFAIYGVPATPAALADIFHNLVVFPWLQDAVTLERYARAVTV CEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHEEHHHHHHHHHHHHHHHEEEE QMGGAAGFAFPAMSGADLRRTVIPYTVTLALRLGEAVLRARREHHDPIAAALAVTGGCVL EECCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEE FRGKVIDVERRLAAGFARGVVRLEGLAEDRGSELRIDFQNENLIARRDGEVLAVVPDLIC EECEEEEHHHHHHHHHHHHHHHEECHHCCCCCEEEEEECCCCEEEECCCCEEEECCHHHE LVDQETAEPVTTEVVRYGLRVVVLGIPAPTLLRTPEALAVVGPQAFGYRDVVYRPLPGLY EECCCCCCHHHHHHHHCCEEEEEEECCCHHHHCCCCCEEEECCCCCCCHHHHCCCCCCCC GGDRIAAERRADALRKPR CCCHHHHHHHHHHHCCCC >Mature Secondary Structure MWELDEEKLEAITIGAGILGTGGGGNPYYGKLYVRRLLREGRRVTIVSPEDVPDDALVVS CCCCCCHHEEEEEECCCEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEE VGGMGAPTIGIERIHRGDEPLAALRALEAHLGRRATHLVPGEIGGANALRPMAVAALADL ECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCC PVVDGDGMGRAFPELQMDTFAIYGVPATPAALADIFHNLVVFPWLQDAVTLERYARAVTV CEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHEEHHHHHHHHHHHHHHHEEEE QMGGAAGFAFPAMSGADLRRTVIPYTVTLALRLGEAVLRARREHHDPIAAALAVTGGCVL EECCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEE FRGKVIDVERRLAAGFARGVVRLEGLAEDRGSELRIDFQNENLIARRDGEVLAVVPDLIC EECEEEEHHHHHHHHHHHHHHHEECHHCCCCCEEEEEECCCCEEEECCCCEEEECCHHHE LVDQETAEPVTTEVVRYGLRVVVLGIPAPTLLRTPEALAVVGPQAFGYRDVVYRPLPGLY EECCCCCCHHHHHHHHCCEEEEEEECCCHHHHCCCCCEEEECCCCCCCHHHHCCCCCCCC GGDRIAAERRADALRKPR CCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA