| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633770
Identifier: 221633770
GI number: 221633770
Start: 1801676
End: 1802308
Strand: Reverse
Name: 221633770
Synonym: trd_1797
Alternate gene names: NA
Gene position: 1802308-1801676 (Counterclockwise)
Preceding gene: 221633774
Following gene: 221633769
Centisome position: 89.98
GC content: 69.19
Gene sequence:
>633_bases GTGATCGCTTGCGGGGTTCCACTCTTCACCCTCCTCGGCCAGACCGACCTGCCTGTCCGCTCCATCGAGTATGCTCGGGC GGGGAAGGATGGAGGCAGGAGCATGCGGCGTTGGCTCGCGACGCTGCTCACCTGGGGTATCGCCCTGATCGCGCATCGCG CATGGTCGGCAGCACCGCCCGGATCGTGGCGACGCGGCGTGAGTGATGCTGCCTCGCACGCGGCATCGGGACTGGCGACT GTCTTGCCGATCACCGGGCAGCTGCCGGCTCCCGGTCGTCTGCTCGCCGGGGCACTCGTCGGTTCCCTCATCCTCGATCT CGATCACGTCGCAGCCGCGCGTTCGCTGCGTCTTTCGGCCTGCATGACGATGCCCTCCCGCCCAGCGACGCACTCAGCCG CGGTGGCGTGCCTGCTGGCACTGGTGACGATGCGTCGAGACCGGGCGCTCGGACTGGGGCTGGGACTCGGGCTCGGCGCT CATCTCGTCCGCGATCTCGCCACTGGCGGGGCTCCCCTGCTCACACCCAAACGCTCGGTCAGCGTCCCCGAGGAGTGGAT GATCCCGCTGCTCGCTGGCATCAGTGCGCTGGGCTGGTGGGGAGCTCGGCGCAGCCGGTCTATCGAGCGATAG
Upstream 100 bases:
>100_bases TAGCGGAAGGAGAGCCCGTAGAGCACGAAGCCGTAGGCATCGAGCAAATAGGCCAGTGTCGTGCTGTCCAGTCCACCCGA CAGGAGAACGACAGCGCGCT
Downstream 100 bases:
>100_bases AATAGGCAGGGAAAGGAAGGAACGATGGGAACGATCGTCACGATCCACGGGATGCTCGGTGAATCGCTCGCCATTATCTA TTTGCTTCTTGCCGTCGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MIACGVPLFTLLGQTDLPVRSIEYARAGKDGGRSMRRWLATLLTWGIALIAHRAWSAAPPGSWRRGVSDAASHAASGLAT VLPITGQLPAPGRLLAGALVGSLILDLDHVAAARSLRLSACMTMPSRPATHSAAVACLLALVTMRRDRALGLGLGLGLGA HLVRDLATGGAPLLTPKRSVSVPEEWMIPLLAGISALGWWGARRSRSIER
Sequences:
>Translated_210_residues MIACGVPLFTLLGQTDLPVRSIEYARAGKDGGRSMRRWLATLLTWGIALIAHRAWSAAPPGSWRRGVSDAASHAASGLAT VLPITGQLPAPGRLLAGALVGSLILDLDHVAAARSLRLSACMTMPSRPATHSAAVACLLALVTMRRDRALGLGLGLGLGA HLVRDLATGGAPLLTPKRSVSVPEEWMIPLLAGISALGWWGARRSRSIER >Mature_210_residues MIACGVPLFTLLGQTDLPVRSIEYARAGKDGGRSMRRWLATLLTWGIALIAHRAWSAAPPGSWRRGVSDAASHAASGLAT VLPITGQLPAPGRLLAGALVGSLILDLDHVAAARSLRLSACMTMPSRPATHSAAVACLLALVTMRRDRALGLGLGLGLGA HLVRDLATGGAPLLTPKRSVSVPEEWMIPLLAGISALGWWGARRSRSIER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21998; Mature: 21998
Theoretical pI: Translated: 12.01; Mature: 12.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIACGVPLFTLLGQTDLPVRSIEYARAGKDGGRSMRRWLATLLTWGIALIAHRAWSAAPP CCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GSWRRGVSDAASHAASGLATVLPITGQLPAPGRLLAGALVGSLILDLDHVAAARSLRLSA CHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CMTMPSRPATHSAAVACLLALVTMRRDRALGLGLGLGLGAHLVRDLATGGAPLLTPKRSV HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SVPEEWMIPLLAGISALGWWGARRSRSIER CCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIACGVPLFTLLGQTDLPVRSIEYARAGKDGGRSMRRWLATLLTWGIALIAHRAWSAAPP CCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GSWRRGVSDAASHAASGLATVLPITGQLPAPGRLLAGALVGSLILDLDHVAAARSLRLSA CHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CMTMPSRPATHSAAVACLLALVTMRRDRALGLGLGLGLGAHLVRDLATGGAPLLTPKRSV HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SVPEEWMIPLLAGISALGWWGARRSRSIER CCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA