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The map label for this gene is yhdW [H]

Identifier: 221633634

GI number: 221633634

Start: 1657838

End: 1658659

Strand: Reverse

Name: yhdW [H]

Synonym: trd_1659

Alternate gene names: 221633634

Gene position: 1658659-1657838 (Counterclockwise)

Preceding gene: 221633635

Following gene: 221633631

Centisome position: 82.81

GC content: 68.86

Gene sequence:

>822_bases
ATGCGAAGCGTGATCGACCGTCCTTTCACGGTCATCGCCCATCGGGGGGCGGGGAATTCGCCGGGTGACAACACGGCCGA
GAGCTTCCAGGCCGCACTGGCGGCTGGGGTGCCAGCACTGGAGTGCGATGTCCGGCAAACTGCGGATGGGGCGCTCGTGC
TGTTGCACGATGGCGTGGTGCCGTTGCCGGGTGGTGGCCGGCTCGTCGTGCGGCAAGCCAGCCTGGCGGCCTTGCGGGTG
GCCATCCCGTCGCTCCTGACGCTGGAAGAATTTCTCGAGGAGTTCGGCGAGCAGGCCCTGGTCAATCTCGACCTCAAAGG
GAGCGGCTTCGAGCGACGACTGGTGACGATCGTGGAGCGGTGGGGGCATCCGGAGCGGGTCTACATCACGAGCCAGCACG
CGGCCAGTCTCCGCCGTTTGGCGCTCTCGCTCCCGACCGCACTGCGTGGCCTTTCGCACGGCCACGCGTTCACGCGCTTT
CCCCGGCGGGTCGCCGGACGAAGCGCCTTCCCGATGCGCTCGCTCATGGCCGTCCAGTTGGCGCTCACCCTGCGGCTGGC
GCGGGCTGATGTCGTGGCGCTCCAGCACCGGGTCGTCACGCCATGGTTGACCCGCTGGTTGCGTCGGCAAGGCTGGCAGG
TGACGACGTGGACCGTGAACGATCCGCGCGAGGCGCTCCGCGCGCTGCGTGCCGGCGTTCGCGCAGTGACGACCGATGTT
CCCCAGCAGCTCCTCGAGGCACTGGCCAAGCGGCAGGCCTATCCAGCACCGGCGAGTACCTGGGACGAGCTTTTCGGTCA
GGCAGCGCTCGCGCGGTGGTGA

Upstream 100 bases:

>100_bases
GTCACCACTGGCTGACCGATGTGCTCGGTGGGTATCTCCTGGGCGGGAGCTGGTACGGCTTGGTGCGGCTCCTGCGGTGC
GCGGGTGAGCGAGCGGAGTC

Downstream 100 bases:

>100_bases
GGGAGCCGTTCGGCGAGTTCACTGGCCAGCCATTCCAACAGGGCGCGGTCCTTCTCGTCGAAGGCGGCCAGCTCATCGCT
GTCGATGTCGATTTCGCCGA

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MRSVIDRPFTVIAHRGAGNSPGDNTAESFQAALAAGVPALECDVRQTADGALVLLHDGVVPLPGGGRLVVRQASLAALRV
AIPSLLTLEEFLEEFGEQALVNLDLKGSGFERRLVTIVERWGHPERVYITSQHAASLRRLALSLPTALRGLSHGHAFTRF
PRRVAGRSAFPMRSLMAVQLALTLRLARADVVALQHRVVTPWLTRWLRRQGWQVTTWTVNDPREALRALRAGVRAVTTDV
PQQLLEALAKRQAYPAPASTWDELFGQAALARW

Sequences:

>Translated_273_residues
MRSVIDRPFTVIAHRGAGNSPGDNTAESFQAALAAGVPALECDVRQTADGALVLLHDGVVPLPGGGRLVVRQASLAALRV
AIPSLLTLEEFLEEFGEQALVNLDLKGSGFERRLVTIVERWGHPERVYITSQHAASLRRLALSLPTALRGLSHGHAFTRF
PRRVAGRSAFPMRSLMAVQLALTLRLARADVVALQHRVVTPWLTRWLRRQGWQVTTWTVNDPREALRALRAGVRAVTTDV
PQQLLEALAKRQAYPAPASTWDELFGQAALARW
>Mature_273_residues
MRSVIDRPFTVIAHRGAGNSPGDNTAESFQAALAAGVPALECDVRQTADGALVLLHDGVVPLPGGGRLVVRQASLAALRV
AIPSLLTLEEFLEEFGEQALVNLDLKGSGFERRLVTIVERWGHPERVYITSQHAASLRRLALSLPTALRGLSHGHAFTRF
PRRVAGRSAFPMRSLMAVQLALTLRLARADVVALQHRVVTPWLTRWLRRQGWQVTTWTVNDPREALRALRAGVRAVTTDV
PQQLLEALAKRQAYPAPASTWDELFGQAALARW

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 29987; Mature: 29987

Theoretical pI: Translated: 11.70; Mature: 11.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVIDRPFTVIAHRGAGNSPGDNTAESFQAALAAGVPALECDVRQTADGALVLLHDGVV
CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECCCHHCCCCEEEEEECCEE
PLPGGGRLVVRQASLAALRVAIPSLLTLEEFLEEFGEQALVNLDLKGSGFERRLVTIVER
ECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHH
WGHPERVYITSQHAASLRRLALSLPTALRGLSHGHAFTRFPRRVAGRSAFPMRSLMAVQL
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHH
ALTLRLARADVVALQHRVVTPWLTRWLRRQGWQVTTWTVNDPREALRALRAGVRAVTTDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
PQQLLEALAKRQAYPAPASTWDELFGQAALARW
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSVIDRPFTVIAHRGAGNSPGDNTAESFQAALAAGVPALECDVRQTADGALVLLHDGVV
CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECCCHHCCCCEEEEEECCEE
PLPGGGRLVVRQASLAALRVAIPSLLTLEEFLEEFGEQALVNLDLKGSGFERRLVTIVER
ECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCHHHHHHHHHHH
WGHPERVYITSQHAASLRRLALSLPTALRGLSHGHAFTRFPRRVAGRSAFPMRSLMAVQL
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHH
ALTLRLARADVVALQHRVVTPWLTRWLRRQGWQVTTWTVNDPREALRALRAGVRAVTTDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
PQQLLEALAKRQAYPAPASTWDELFGQAALARW
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]