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The map label for this gene is nusB [H]

Identifier: 221633595

GI number: 221633595

Start: 1614121

End: 1614627

Strand: Reverse

Name: nusB [H]

Synonym: trd_1619

Alternate gene names: 221633595

Gene position: 1614627-1614121 (Counterclockwise)

Preceding gene: 221633596

Following gene: 221633594

Centisome position: 80.61

GC content: 61.74

Gene sequence:

>507_bases
ATGGATTCGGTTCCGATCGCGATCACGATCGAACATGCCGTCATTGCGCCGGAGCGACGAGGGAACCAAAAGGAACTGGA
CATGTCACTCGCGCGAATCCGACGCCAAGCACGTATCCTGGCTCTACAGATCCTGTACGAGGTCGATGTCGCCAACCACT
CGCTGGAAGAGGTGCTCGAGCGGCATCGCAGCCAGGCGAGCATTGCCCAGCCGGTGCGCCGCTATGCGGAGCGGCTCGTG
ACCGGTGTGTGGGCCGATCGCGAGCGGATCGACCGGATGATCGCTGAAGCAGCACCGGCTTTCCCGGTCGACCAGCTTCC
GCCGGTCGATCGCAACATCCTCCGCATCGCGATCTACGAGCTGTTGCACGAGCCGGATGTCCCTTTGAAGGCTGCCATCA
ACGAAGCCGTTGAAATCGCGAAACAGTATGGCGGCGAGAGTTCCAGCCGCTTCGTCAACGGGGTGCTCGGGACGATCGCT
GCTAACCTGGCATCCTCGGGAAGCTGA

Upstream 100 bases:

>100_bases
CCTCGCCAGCCAGCAGAGCTGAGCAGGGTACAATCGATCCGTGGGGGCTGCTCGGCAGTCCTCTCGATGGCGCTACGGTT
CCGCTCGCCGCGAGGATTCC

Downstream 100 bases:

>100_bases
CGCGCTGCCGTTAACCGCCGTGGGTTCCGAGTCTCGACCTGGCGGATTGGCCGACTCGCGGGACGATCCTCGGCAGCACG
TTGTGCGCGATCTCCGGTGG

Product: transcription antitermination factor NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MDSVPIAITIEHAVIAPERRGNQKELDMSLARIRRQARILALQILYEVDVANHSLEEVLERHRSQASIAQPVRRYAERLV
TGVWADRERIDRMIAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQYGGESSSRFVNGVLGTIA
ANLASSGS

Sequences:

>Translated_168_residues
MDSVPIAITIEHAVIAPERRGNQKELDMSLARIRRQARILALQILYEVDVANHSLEEVLERHRSQASIAQPVRRYAERLV
TGVWADRERIDRMIAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQYGGESSSRFVNGVLGTIA
ANLASSGS
>Mature_168_residues
MDSVPIAITIEHAVIAPERRGNQKELDMSLARIRRQARILALQILYEVDVANHSLEEVLERHRSQASIAQPVRRYAERLV
TGVWADRERIDRMIAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQYGGESSSRFVNGVLGTIA
ANLASSGS

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=120, Percent_Identity=34.1666666666667, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18638; Mature: 18638

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSVPIAITIEHAVIAPERRGNQKELDMSLARIRRQARILALQILYEVDVANHSLEEVLE
CCCCCEEEEECCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RHRSQASIAQPVRRYAERLVTGVWADRERIDRMIAEAAPAFPVDQLPPVDRNILRIAIYE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LLHEPDVPLKAAINEAVEIAKQYGGESSSRFVNGVLGTIAANLASSGS
HHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDSVPIAITIEHAVIAPERRGNQKELDMSLARIRRQARILALQILYEVDVANHSLEEVLE
CCCCCEEEEECCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RHRSQASIAQPVRRYAERLVTGVWADRERIDRMIAEAAPAFPVDQLPPVDRNILRIAIYE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
LLHEPDVPLKAAINEAVEIAKQYGGESSSRFVNGVLGTIAANLASSGS
HHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA