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The map label for this gene is yfdE [H]

Identifier: 221633345

GI number: 221633345

Start: 1353638

End: 1354879

Strand: Reverse

Name: yfdE [H]

Synonym: trd_1364

Alternate gene names: 221633345

Gene position: 1354879-1353638 (Counterclockwise)

Preceding gene: 221633346

Following gene: 221633341

Centisome position: 67.64

GC content: 63.04

Gene sequence:

>1242_bases
GTGTCGGTGGCGTTCGTCGTTGTCTTTGGATGGGTGGGAGGCGAACGGATCATGGAGCGACTGCCCCTCAGCGGTGTGCG
CGTCGTCGATCTCACGCGCGTGATGGCTGGCCCCTACTGCACGATGCTCCTCGGTGACCTCGGTGCAGACGTCATCAAGA
TCGAGCGTCCTGGAACCGGCGACGATACGCGAGCCTGGGGACCGCCGTTCATCGATGGCGTGAGCGCCTACTACCTTTCG
GTGAATCGGAACAAGCGGAGCATCACCCTGGATCTCAAGCACCCCGCTGGCCAAGAAGTGTTCTGGCGACTGGTCGATCG
CGCTGACGTCGTCGTCGAGAACTTCAGCCCGGGGACAGTCGACCGACTGGGTATCGGCTATCAGGCGGTACGGGGACGGC
GCCCGCAGATCATCTACTGCTCGATCTCAGGCTTCGGCCAGACCGGACCGGGCAAGGACCGGACGGCGTACGACCTCATC
GTGCAAGGGATGTCCGGCCTCATGAGCGTCACCGGGTTTCCGGAGGGGGAGCCAGTGCGCTTCGGTGTCCCGATCGCCGA
TATCGGTGCCGGTATGTTCGCGGCTCTCGCGATCGTCGCTGCACTCTATCACCGTGCGCAGACTGGTGAAGGGCAGTACA
TCGATACCTCCATGCTGGGTGGCCAAGTCGCGCTCCTCACCTATCAAGCGGGGATCTACTTCGCGACGGGGGAAGCACCC
AAGCGGACGGGGAATGCGCATCCGATCGTCGCGCCCTACCAGACGTTCCGCAGTGCTGATGGACATGTCAATATCGCGGC
AGGGAACGATGCGATCTTCACGCGCATGTGCCGGGCGCTCGGGTTGGACGATTTGCTCGAGGACGAGCGATTCGCGACCA
ATGCTGGCCGGATCACCAACTTGCCGGAGCTGGTCGAGCGGATCGAGTCGGTGACGAGCACGCTCACGACCGCCGAGATC
GTGCATCGGCTCGATGCTGCCCAAGTGCCGTGCGGGCCGATCTACACGGTTCCGGAAGTCTTCGCTGATCCGCAAGTGCA
GCACCTCGAATTGCACCAGCGCATCCCACACCCCACATTGGGTATGGTGGATCAGACCGGTTTCCCCTGGCGTTTTTCCC
AGACGCCGGCTCGTATACGGCGTTACCCCCCGCTCCTGGGTGAGCATACCGAGGAAGTGCTCGGCGAACTCGGTTACACG
TCGGATGAGATCACGGCGATGCGCCAGCAGGGAGCCGTCTAG

Upstream 100 bases:

>100_bases
CGCCATCTCGCACGGCTTGGTTCCCCGGCCGACTGACGTGCCGCGTCGCTGAGCGTGGCGCTGCGAGCTGATTTGTGGCA
CAGTATGAGGTGCGCCACCG

Downstream 100 bases:

>100_bases
CCAGTCGGGAGCTCGTACCAGGGGTGCCAGGTCGAGCGAACTTTCCAGCGTTCCAGTACCATGACGAGCGGTTCGCCGAG
CAAGAGAAGCAATGCGGCAT

Product: protein C7orf10

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSVAFVVVFGWVGGERIMERLPLSGVRVVDLTRVMAGPYCTMLLGDLGADVIKIERPGTGDDTRAWGPPFIDGVSAYYLS
VNRNKRSITLDLKHPAGQEVFWRLVDRADVVVENFSPGTVDRLGIGYQAVRGRRPQIIYCSISGFGQTGPGKDRTAYDLI
VQGMSGLMSVTGFPEGEPVRFGVPIADIGAGMFAALAIVAALYHRAQTGEGQYIDTSMLGGQVALLTYQAGIYFATGEAP
KRTGNAHPIVAPYQTFRSADGHVNIAAGNDAIFTRMCRALGLDDLLEDERFATNAGRITNLPELVERIESVTSTLTTAEI
VHRLDAAQVPCGPIYTVPEVFADPQVQHLELHQRIPHPTLGMVDQTGFPWRFSQTPARIRRYPPLLGEHTEEVLGELGYT
SDEITAMRQQGAV

Sequences:

>Translated_413_residues
MSVAFVVVFGWVGGERIMERLPLSGVRVVDLTRVMAGPYCTMLLGDLGADVIKIERPGTGDDTRAWGPPFIDGVSAYYLS
VNRNKRSITLDLKHPAGQEVFWRLVDRADVVVENFSPGTVDRLGIGYQAVRGRRPQIIYCSISGFGQTGPGKDRTAYDLI
VQGMSGLMSVTGFPEGEPVRFGVPIADIGAGMFAALAIVAALYHRAQTGEGQYIDTSMLGGQVALLTYQAGIYFATGEAP
KRTGNAHPIVAPYQTFRSADGHVNIAAGNDAIFTRMCRALGLDDLLEDERFATNAGRITNLPELVERIESVTSTLTTAEI
VHRLDAAQVPCGPIYTVPEVFADPQVQHLELHQRIPHPTLGMVDQTGFPWRFSQTPARIRRYPPLLGEHTEEVLGELGYT
SDEITAMRQQGAV
>Mature_412_residues
SVAFVVVFGWVGGERIMERLPLSGVRVVDLTRVMAGPYCTMLLGDLGADVIKIERPGTGDDTRAWGPPFIDGVSAYYLSV
NRNKRSITLDLKHPAGQEVFWRLVDRADVVVENFSPGTVDRLGIGYQAVRGRRPQIIYCSISGFGQTGPGKDRTAYDLIV
QGMSGLMSVTGFPEGEPVRFGVPIADIGAGMFAALAIVAALYHRAQTGEGQYIDTSMLGGQVALLTYQAGIYFATGEAPK
RTGNAHPIVAPYQTFRSADGHVNIAAGNDAIFTRMCRALGLDDLLEDERFATNAGRITNLPELVERIESVTSTLTTAEIV
HRLDAAQVPCGPIYTVPEVFADPQVQHLELHQRIPHPTLGMVDQTGFPWRFSQTPARIRRYPPLLGEHTEEVLGELGYTS
DEITAMRQQGAV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=393, Percent_Identity=43.5114503816794, Blast_Score=347, Evalue=2e-95,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=40.8114558472554, Blast_Score=332, Evalue=5e-91,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=37.9474940334129, Blast_Score=289, Evalue=3e-78,
Organism=Homo sapiens, GI300863126, Length=393, Percent_Identity=38.9312977099237, Blast_Score=285, Evalue=6e-77,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=32.2335025380711, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI42794625, Length=391, Percent_Identity=32.4808184143223, Blast_Score=169, Evalue=5e-42,
Organism=Homo sapiens, GI266458393, Length=279, Percent_Identity=33.3333333333333, Blast_Score=138, Evalue=9e-33,
Organism=Homo sapiens, GI266458397, Length=245, Percent_Identity=35.5102040816327, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=35.6164383561644, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=35.6164383561644, Blast_Score=98, Evalue=1e-20,
Organism=Escherichia coli, GI87082093, Length=326, Percent_Identity=41.4110429447853, Blast_Score=282, Evalue=3e-77,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=33.3333333333333, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=25.8145363408521, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI32564160, Length=328, Percent_Identity=25.9146341463415, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=306, Percent_Identity=28.4313725490196, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=41.7085427135678, Blast_Score=337, Evalue=1e-92,
Organism=Drosophila melanogaster, GI24585488, Length=211, Percent_Identity=33.6492890995261, Blast_Score=115, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44961; Mature: 44830

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAFVVVFGWVGGERIMERLPLSGVRVVDLTRVMAGPYCTMLLGDLGADVIKIERPGTG
CCEEEEEEEECCCHHHHHHHCCCCCEEHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCC
DDTRAWGPPFIDGVSAYYLSVNRNKRSITLDLKHPAGQEVFWRLVDRADVVVENFSPGTV
CCCCCCCCCHHHCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHEEEECCCCCCH
DRLGIGYQAVRGRRPQIIYCSISGFGQTGPGKDRTAYDLIVQGMSGLMSVTGFPEGEPVR
HHHCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
FGVPIADIGAGMFAALAIVAALYHRAQTGEGQYIDTSMLGGQVALLTYQAGIYFATGEAP
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCEEEEEEEECCEEEEECCCC
KRTGNAHPIVAPYQTFRSADGHVNIAAGNDAIFTRMCRALGLDDLLEDERFATNAGRITN
CCCCCCCCEECCHHHHCCCCCEEEEEECCHHHHHHHHHHCCCHHHHHCHHHHCCCCCCCC
LPELVERIESVTSTLTTAEIVHRLDAAQVPCGPIYTVPEVFADPQVQHLELHQRIPHPTL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCC
GMVDQTGFPWRFSQTPARIRRYPPLLGEHTEEVLGELGYTSDEITAMRQQGAV
CCCCCCCCCEEECCCHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SVAFVVVFGWVGGERIMERLPLSGVRVVDLTRVMAGPYCTMLLGDLGADVIKIERPGTG
CEEEEEEEECCCHHHHHHHCCCCCEEHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCCC
DDTRAWGPPFIDGVSAYYLSVNRNKRSITLDLKHPAGQEVFWRLVDRADVVVENFSPGTV
CCCCCCCCCHHHCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHEEEECCCCCCH
DRLGIGYQAVRGRRPQIIYCSISGFGQTGPGKDRTAYDLIVQGMSGLMSVTGFPEGEPVR
HHHCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
FGVPIADIGAGMFAALAIVAALYHRAQTGEGQYIDTSMLGGQVALLTYQAGIYFATGEAP
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCEEEEEEEECCEEEEECCCC
KRTGNAHPIVAPYQTFRSADGHVNIAAGNDAIFTRMCRALGLDDLLEDERFATNAGRITN
CCCCCCCCEECCHHHHCCCCCEEEEEECCHHHHHHHHHHCCCHHHHHCHHHHCCCCCCCC
LPELVERIESVTSTLTTAEIVHRLDAAQVPCGPIYTVPEVFADPQVQHLELHQRIPHPTL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCC
GMVDQTGFPWRFSQTPARIRRYPPLLGEHTEEVLGELGYTSDEITAMRQQGAV
CCCCCCCCCEEECCCHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]