Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is 221633239

Identifier: 221633239

GI number: 221633239

Start: 1241734

End: 1242849

Strand: Reverse

Name: 221633239

Synonym: trd_1257

Alternate gene names: NA

Gene position: 1242849-1241734 (Counterclockwise)

Preceding gene: 221633240

Following gene: 221633238

Centisome position: 62.05

GC content: 62.54

Gene sequence:

>1116_bases
ATGGCCTGTTCCAGCGATGGAGTGCCCAGCAGCGTCAGCCAGCGATCGATTCTCTGGCTGCTCGAGGCGATCGAGACGCT
GGAGCCGGCGTTGCAGCAGGCGTTCCGGGACCTGTTCGATGTCGATGTCACGATCGGGGAACTGGTCCTTCCTGATCACA
TGCGGAAGTGGGTCGAGCGCTACTTCGGTTCCCCGGAGGCGGTGCTGCGGCAACGGATCGTCAAAGTGACCAACCGGTGG
ACGCTCGACGCGACGCTGTTCAACGAGTTGCGGGCGCGCCGGCCGCTGGAGGCGCGGATACCGGTCGAACTGGCTGACGA
ACTGGCGCGCACTGCGCCCGATCCATTCTGCGAACCGGAATACAACACGCCCGAGGATGTCTTCGGTCGCATCCGGGGAC
GCTACGTCATGACCGCGAGCAACATCGCCAAGTACGATGGCCTCCATGGAGTCATCATTTTCCGCGAGCATGATCCCTTG
GCTTTCGATGAGCCGTTGGTGCGCGAGATGGTCGAGGTCGCTCGTGGGTGGTTCGAGCGAGCTCACCAGGTCGATTGCGC
AGCGGTCTATCCCTTCTTCATGTGGAATTGCCTCTGGAAAAGTGGCGCATCGATTCCTCATGGGCACGCGCAGGTCAGCC
TCACCCGTGGGATGCACTACGGAAAGGTGGAGCGTGAGCGGCGTGCCGCGGTGCGCTACAGGACCGAGATGGGGCGTGGG
TACTTCGACGATCTGTTTCGGATTCACCAGGCACTCGGTCTCGGCAAGTCCGTCAACGGTATCCGCGTGTACGCGAGTCT
CACGCCGCTCAAAGAGAAAGAGACGGTTCTCTTGTCCACTGCCTTCGACGATGATCTCGCCCGAGTCATGAATCGGGTCG
TGCGTTGCCTCGTCGACGACCTCAACGTGACATCCTTCAACCTCGTCGCGTGGCTGCCGCCGCTGGTCCCGACTGCCGAG
GACTGGTCGGATATGCCAGTGGTCGTCCGGGTCGTCGACCGGGGTGATCCGCTTTCGCGGACGTCCGATTTTGGGGCGAT
GGAGCTCTATGCAGCCAGCGTGGTGGCGAGCGATCCGTTTCGCGTAGCCGAAGCGCTGTGGCGCTGCCTCGGCTGA

Upstream 100 bases:

>100_bases
AGCAACCGGCGGAGGAATATCTGGCAGTGTACGAGCGTGTCGCGGCGCTGCGGCGAACCGGCGCGCTCGAGACAGTCCGC
TGAGGAGGAAGGGGAGACGG

Downstream 100 bases:

>100_bases
GCATGCGCAGAGGGGAATACCTCGCGAGTGTCTGGAAGCAGCGTGCGCTGTTCCCAACGACTTCGCTGGTCGGATGCTCA
TGGAGCGAGGTTCGCAGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MACSSDGVPSSVSQRSILWLLEAIETLEPALQQAFRDLFDVDVTIGELVLPDHMRKWVERYFGSPEAVLRQRIVKVTNRW
TLDATLFNELRARRPLEARIPVELADELARTAPDPFCEPEYNTPEDVFGRIRGRYVMTASNIAKYDGLHGVIIFREHDPL
AFDEPLVREMVEVARGWFERAHQVDCAAVYPFFMWNCLWKSGASIPHGHAQVSLTRGMHYGKVERERRAAVRYRTEMGRG
YFDDLFRIHQALGLGKSVNGIRVYASLTPLKEKETVLLSTAFDDDLARVMNRVVRCLVDDLNVTSFNLVAWLPPLVPTAE
DWSDMPVVVRVVDRGDPLSRTSDFGAMELYAASVVASDPFRVAEALWRCLG

Sequences:

>Translated_371_residues
MACSSDGVPSSVSQRSILWLLEAIETLEPALQQAFRDLFDVDVTIGELVLPDHMRKWVERYFGSPEAVLRQRIVKVTNRW
TLDATLFNELRARRPLEARIPVELADELARTAPDPFCEPEYNTPEDVFGRIRGRYVMTASNIAKYDGLHGVIIFREHDPL
AFDEPLVREMVEVARGWFERAHQVDCAAVYPFFMWNCLWKSGASIPHGHAQVSLTRGMHYGKVERERRAAVRYRTEMGRG
YFDDLFRIHQALGLGKSVNGIRVYASLTPLKEKETVLLSTAFDDDLARVMNRVVRCLVDDLNVTSFNLVAWLPPLVPTAE
DWSDMPVVVRVVDRGDPLSRTSDFGAMELYAASVVASDPFRVAEALWRCLG
>Mature_370_residues
ACSSDGVPSSVSQRSILWLLEAIETLEPALQQAFRDLFDVDVTIGELVLPDHMRKWVERYFGSPEAVLRQRIVKVTNRWT
LDATLFNELRARRPLEARIPVELADELARTAPDPFCEPEYNTPEDVFGRIRGRYVMTASNIAKYDGLHGVIIFREHDPLA
FDEPLVREMVEVARGWFERAHQVDCAAVYPFFMWNCLWKSGASIPHGHAQVSLTRGMHYGKVERERRAAVRYRTEMGRGY
FDDLFRIHQALGLGKSVNGIRVYASLTPLKEKETVLLSTAFDDDLARVMNRVVRCLVDDLNVTSFNLVAWLPPLVPTAED
WSDMPVVVRVVDRGDPLSRTSDFGAMELYAASVVASDPFRVAEALWRCLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42145; Mature: 42014

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MACSSDGVPSSVSQRSILWLLEAIETLEPALQQAFRDLFDVDVTIGELVLPDHMRKWVER
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCHHHHHHHHH
YFGSPEAVLRQRIVKVTNRWTLDATLFNELRARRPLEARIPVELADELARTAPDPFCEPE
HCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCC
YNTPEDVFGRIRGRYVMTASNIAKYDGLHGVIIFREHDPLAFDEPLVREMVEVARGWFER
CCCHHHHHHHHCCCEEEEEHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
AHQVDCAAVYPFFMWNCLWKSGASIPHGHAQVSLTRGMHYGKVERERRAAVRYRTEMGRG
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHCCCCCCHHHHHHHHHHHHHHHHCCC
YFDDLFRIHQALGLGKSVNGIRVYASLTPLKEKETVLLSTAFDDDLARVMNRVVRCLVDD
HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
LNVTSFNLVAWLPPLVPTAEDWSDMPVVVRVVDRGDPLSRTSDFGAMELYAASVVASDPF
CCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHH
RVAEALWRCLG
HHHHHHHHHCC
>Mature Secondary Structure 
ACSSDGVPSSVSQRSILWLLEAIETLEPALQQAFRDLFDVDVTIGELVLPDHMRKWVER
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCHHHHHHHHH
YFGSPEAVLRQRIVKVTNRWTLDATLFNELRARRPLEARIPVELADELARTAPDPFCEPE
HCCCHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCC
YNTPEDVFGRIRGRYVMTASNIAKYDGLHGVIIFREHDPLAFDEPLVREMVEVARGWFER
CCCHHHHHHHHCCCEEEEEHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
AHQVDCAAVYPFFMWNCLWKSGASIPHGHAQVSLTRGMHYGKVERERRAAVRYRTEMGRG
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHCCCCCCHHHHHHHHHHHHHHHHCCC
YFDDLFRIHQALGLGKSVNGIRVYASLTPLKEKETVLLSTAFDDDLARVMNRVVRCLVDD
HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
LNVTSFNLVAWLPPLVPTAEDWSDMPVVVRVVDRGDPLSRTSDFGAMELYAASVVASDPF
CCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHH
RVAEALWRCLG
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA