| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221633226
Identifier: 221633226
GI number: 221633226
Start: 1229919
End: 1230569
Strand: Reverse
Name: 221633226
Synonym: trd_1244
Alternate gene names: NA
Gene position: 1230569-1229919 (Counterclockwise)
Preceding gene: 221633227
Following gene: 221633224
Centisome position: 61.44
GC content: 63.59
Gene sequence:
>651_bases GTGGCGAACGCGATCACCGCTGGGCGCATCGCCCTCCTTTTCCTCGGTATCGGCATGCTTTACACGCAGCGGGTGTGGAC GCTCGGTCTGGCCATCGTCATCTTGCTCGTCGTCTTCGTGGCGGATGCGCTCGATGGGATCGTCGCGCGCCGGCGTGGGC GAGAGACGGTATTCGGCGCGGTATTCGATATCGCTGGTGATCGCGTGGTGGAAAATGCGCTGTGGGTGGTCTTCGCCGAT CTCGGCGTGATCGGCGTCTGGGCACCGCTGCTCGTGCTGACGCGCGGTTTTCTCGTTGATGGACTGCGCAGTGTCGCGCT GCAAGCGGGACGCACGCCTTTCGGTGAGCGCTCCATGGCACGCACGCCGATCACTCGTTTCCTGACTGCCTCGCGGTGCA TGCGGGCGCTGTACGGTACGGCCAAGTTGGTGGCATTCCTCTTTCTCGCTGGTGTAGTCGCGACTAGGCGTGCGGAGTTC CCGATCATCGACCGACTCTTCGTCGAACCGGTGTTTCTGCTCGCTGGGTGGCTCTGCGTGTATCTCACGCTGGTCTTGAC GGTCGCGCGAGGATTACCGGTCGTTGTCGATGCGTGGCCCTACCTCGGCTGGACACGGGAAGAATTCGCTCGCGACCGAC GCTCGGGCTGA
Upstream 100 bases:
>100_bases CGGCTTGGCTGCTACTCGGGGGGACGATCATCGTGCTGGTCCTCGTCTGGATCGCTCTCCTCGTGATCACGCTCTGAAGA CAAGGAGCAGGGGCTGGATC
Downstream 100 bases:
>100_bases GCGGTGAGCGCATGCGAGGCGATCGTTTCGGGCGAGCGCTGCGTCTCCCTCTCCTGGAACGTCCGGCCTGTTGGGTGGTC GATCGCATCGGAGAAGCTGC
Product: CDP-alcohol phosphatidyltransferase family
Products: NA
Alternate protein names: CDP-Alcohol Phosphatidyltransferase Family
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MANAITAGRIALLFLGIGMLYTQRVWTLGLAIVILLVVFVADALDGIVARRRGRETVFGAVFDIAGDRVVENALWVVFAD LGVIGVWAPLLVLTRGFLVDGLRSVALQAGRTPFGERSMARTPITRFLTASRCMRALYGTAKLVAFLFLAGVVATRRAEF PIIDRLFVEPVFLLAGWLCVYLTLVLTVARGLPVVVDAWPYLGWTREEFARDRRSG
Sequences:
>Translated_216_residues MANAITAGRIALLFLGIGMLYTQRVWTLGLAIVILLVVFVADALDGIVARRRGRETVFGAVFDIAGDRVVENALWVVFAD LGVIGVWAPLLVLTRGFLVDGLRSVALQAGRTPFGERSMARTPITRFLTASRCMRALYGTAKLVAFLFLAGVVATRRAEF PIIDRLFVEPVFLLAGWLCVYLTLVLTVARGLPVVVDAWPYLGWTREEFARDRRSG >Mature_215_residues ANAITAGRIALLFLGIGMLYTQRVWTLGLAIVILLVVFVADALDGIVARRRGRETVFGAVFDIAGDRVVENALWVVFADL GVIGVWAPLLVLTRGFLVDGLRSVALQAGRTPFGERSMARTPITRFLTASRCMRALYGTAKLVAFLFLAGVVATRRAEFP IIDRLFVEPVFLLAGWLCVYLTLVLTVARGLPVVVDAWPYLGWTREEFARDRRSG
Specific function: Unknown
COG id: COG0558
COG function: function code I; Phosphatidylglycerophosphate synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23757; Mature: 23625
Theoretical pI: Translated: 11.04; Mature: 11.04
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANAITAGRIALLFLGIGMLYTQRVWTLGLAIVILLVVFVADALDGIVARRRGRETVFGA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH VFDIAGDRVVENALWVVFADLGVIGVWAPLLVLTRGFLVDGLRSVALQAGRTPFGERSMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH RTPITRFLTASRCMRALYGTAKLVAFLFLAGVVATRRAEFPIIDRLFVEPVFLLAGWLCV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH YLTLVLTVARGLPVVVDAWPYLGWTREEFARDRRSG HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCC >Mature Secondary Structure ANAITAGRIALLFLGIGMLYTQRVWTLGLAIVILLVVFVADALDGIVARRRGRETVFGA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH VFDIAGDRVVENALWVVFADLGVIGVWAPLLVLTRGFLVDGLRSVALQAGRTPFGERSMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH RTPITRFLTASRCMRALYGTAKLVAFLFLAGVVATRRAEFPIIDRLFVEPVFLLAGWLCV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH YLTLVLTVARGLPVVVDAWPYLGWTREEFARDRRSG HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA