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The map label for this gene is recJ [H]

Identifier: 221633177

GI number: 221633177

Start: 1181856

End: 1183541

Strand: Reverse

Name: recJ [H]

Synonym: trd_1194

Alternate gene names: 221633177

Gene position: 1183541-1181856 (Counterclockwise)

Preceding gene: 221633178

Following gene: 221633175

Centisome position: 59.09

GC content: 64.95

Gene sequence:

>1686_bases
ATGCCGCGCTACCGGTGGCGGGAACCGGAACGAGTTCCGGAAATGGCTCGGGAACTCGCGGTTCATCCGCTGCTGGCCGC
TGTCCTCTACCGTCGGGGTATTCGGAACCACGAGGAGGTGCGGCGCTTCCTCCAGCCGCACCTCAGCGACCTGCCTGATC
CCGCCGCCTTGCCCGACAGTGGGAGAGCGGTATCCCTCGTCGAGGAGGTACGGTGCCGGTCACGACCAGTGGTCGTCTTC
GGCGACTACGATGTGGATGGTTTGACCGCAACGACGCTCCTCGCGCAGCTCTTTGGGGAATTCGGGTTGACGGTCATCCC
GATGGTGCCCCACCGCCTGCGCGATGGATATGGTTTCCAGCGTCATCACGTGCCAGGCGTGCTGGAGCACCGGCCTGCGC
TCCTCGTGACGGTGGATTGCGGAACCGGTGACTGGGATGCCTTGCGCGATGTTCTCCGAGCTGGGGTTCCGGTCATCGTT
CTGGACCATCACGCTGTCCATGACGAGGCCTGGCCAGATGAGCTGGCATTCGTCTCGGTCGCGCGGCCGGATGCTCCACC
GGTCTTCCGAACACTGTCGGCAGTCGGTGTCGCGTACCAGTTCGCACGCCTGCTGCTCGGGAACGAAGCTGCGTCCCGTT
GGCTTCCCTTGGTCGCGCTCGGTACGGTTGCTGACGTCGTTCCCTTGGTCGGGATCAACCGAACGCTCGTGGCGCTCGGG
CTGAAGCGTTTTTGGGAGACGGCACCGCTCGGCCTGCGGACACTCGCGCGCCTGAGTGGACTCGACAGCGCACGGGGACA
GCGGTTGACCAGTTGGCATTGCGGGTATGTACTGGGGCCCCGGCTCAATGCAGCTGGGAGAATGGACGATCCGCGCTTGG
CGCTCGAGCTCCTGTTGACGGCGGACGCACAGCGAGCGGAGGAACTAGCCCGGAAACTCAACGAACTCAACGCCTTGCGG
CAGCGTGCGATCGAGCGGATGTTGGCGGAAGCCGAGCAACGGATCGACGCACTCGGGAGCTTACCGCCCGTCCTGGTGCT
GGCTGATAGTGCCTGGAGCGTTGGGTTGGTCGGGCTCGCGGCCAGCAAGCTCGTCAGTCGCTATGCGCGTCCGGTCGTGC
TCCTCGCCCGAGAGAGCGAGGTCAGTCGTGGTTCTGCCCGCAGCATCGATGGTTTCGATATTGCGGCAGCGCTGGCGCGC
TGCCGTGACCTCTTGATCGACCATGGTGGACATCATGCGGCCGCAGGATTGACGGTGGAGACGGAACGCATCGCAGAACT
GGAAGCGCGGCTGCTCGAAATCGCCGCGGAACACCTTGGCCAAGAGGAACCGGCGTTACCGCTCGAGTTGGACGCGGAAC
TCCACCCGTACCAGATCGCTCTGGAGACGTGGGAGGTGCTGGCGCAGCTGGAACCCTATGGTCACGGCAACCCGGTACCG
CGTTTCCTCGTCCGCGATGTTCGAGCTGTCGACATCACGAGCACGCAGAACGAGCGGCACCTGCGCTTCACCGTCGTCGC
ACCGGACGGCACCGTGCGCCAGGCGGTCTGGTTCGAGGGGGGACGAGAGATCGCCCGCTTGGCCCGTGCTGGGCGCATCG
ACATCGCGTTCACGTTGCGACGGAGCGATTGGAACGGGCAGGAACGAGTCGAGCTGGACGTGATCGACATTCGTCCGACC
CGCTGA

Upstream 100 bases:

>100_bases
AATCGTGCGTTTGCCCGCACGGAAGCGAGCCCTCGATTGCCGGCCGATGAATCGTTCGCAGTCAACCGGGTTCGGGTAGT
CCGTCCGATGGGAGAGGCGA

Downstream 100 bases:

>100_bases
TCGCTGTCTTCTCCCCTCTGTCACGAATCTCGATCCAGCGTGTTCGGCGTCCCTTGGAGAAGGCATCGACACACTGGCCG
GAGCGATGCCGCTCCTTCTC

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 561; Mature: 560

Protein sequence:

>561_residues
MPRYRWREPERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDLPDPAALPDSGRAVSLVEEVRCRSRPVVVF
GDYDVDGLTATTLLAQLFGEFGLTVIPMVPHRLRDGYGFQRHHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIV
LDHHAVHDEAWPDELAFVSVARPDAPPVFRTLSAVGVAYQFARLLLGNEAASRWLPLVALGTVADVVPLVGINRTLVALG
LKRFWETAPLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNAAGRMDDPRLALELLLTADAQRAEELARKLNELNALR
QRAIERMLAEAEQRIDALGSLPPVLVLADSAWSVGLVGLAASKLVSRYARPVVLLARESEVSRGSARSIDGFDIAAALAR
CRDLLIDHGGHHAAAGLTVETERIAELEARLLEIAAEHLGQEEPALPLELDAELHPYQIALETWEVLAQLEPYGHGNPVP
RFLVRDVRAVDITSTQNERHLRFTVVAPDGTVRQAVWFEGGREIARLARAGRIDIAFTLRRSDWNGQERVELDVIDIRPT
R

Sequences:

>Translated_561_residues
MPRYRWREPERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDLPDPAALPDSGRAVSLVEEVRCRSRPVVVF
GDYDVDGLTATTLLAQLFGEFGLTVIPMVPHRLRDGYGFQRHHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIV
LDHHAVHDEAWPDELAFVSVARPDAPPVFRTLSAVGVAYQFARLLLGNEAASRWLPLVALGTVADVVPLVGINRTLVALG
LKRFWETAPLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNAAGRMDDPRLALELLLTADAQRAEELARKLNELNALR
QRAIERMLAEAEQRIDALGSLPPVLVLADSAWSVGLVGLAASKLVSRYARPVVLLARESEVSRGSARSIDGFDIAAALAR
CRDLLIDHGGHHAAAGLTVETERIAELEARLLEIAAEHLGQEEPALPLELDAELHPYQIALETWEVLAQLEPYGHGNPVP
RFLVRDVRAVDITSTQNERHLRFTVVAPDGTVRQAVWFEGGREIARLARAGRIDIAFTLRRSDWNGQERVELDVIDIRPT
R
>Mature_560_residues
PRYRWREPERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDLPDPAALPDSGRAVSLVEEVRCRSRPVVVFG
DYDVDGLTATTLLAQLFGEFGLTVIPMVPHRLRDGYGFQRHHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIVL
DHHAVHDEAWPDELAFVSVARPDAPPVFRTLSAVGVAYQFARLLLGNEAASRWLPLVALGTVADVVPLVGINRTLVALGL
KRFWETAPLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNAAGRMDDPRLALELLLTADAQRAEELARKLNELNALRQ
RAIERMLAEAEQRIDALGSLPPVLVLADSAWSVGLVGLAASKLVSRYARPVVLLARESEVSRGSARSIDGFDIAAALARC
RDLLIDHGGHHAAAGLTVETERIAELEARLLEIAAEHLGQEEPALPLELDAELHPYQIALETWEVLAQLEPYGHGNPVPR
FLVRDVRAVDITSTQNERHLRFTVVAPDGTVRQAVWFEGGREIARLARAGRIDIAFTLRRSDWNGQERVELDVIDIRPTR

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=600, Percent_Identity=30, Blast_Score=191, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 62126; Mature: 61995

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRYRWREPERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDLPDPAALPDS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
GRAVSLVEEVRCRSRPVVVFGDYDVDGLTATTLLAQLFGEFGLTVIPMVPHRLRDGYGFQ
CCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCHHHHCCCCCC
RHHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIVLDHHAVHDEAWPDELAFVSV
CCCCCCHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHCCCCCCCCEEEEEE
ARPDAPPVFRTLSAVGVAYQFARLLLGNEAASRWLPLVALGTVADVVPLVGINRTLVALG
CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LKRFWETAPLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNAAGRMDDPRLALELLLT
HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEECCCEEECCCCCCCCCCCCHHHHHHHHHH
ADAQRAEELARKLNELNALRQRAIERMLAEAEQRIDALGSLPPVLVLADSAWSVGLVGLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
ASKLVSRYARPVVLLARESEVSRGSARSIDGFDIAAALARCRDLLIDHGGHHAAAGLTVE
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEEC
TERIAELEARLLEIAAEHLGQEEPALPLELDAELHPYQIALETWEVLAQLEPYGHGNPVP
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
RFLVRDVRAVDITSTQNERHLRFTVVAPDGTVRQAVWFEGGREIARLARAGRIDIAFTLR
HHHHHHHHEEEEECCCCCCEEEEEEECCCCCHHHHHHHCCCHHHHHHHHCCCEEEEEEEE
RSDWNGQERVELDVIDIRPTR
ECCCCCCCEEEEEEEECCCCC
>Mature Secondary Structure 
PRYRWREPERVPEMARELAVHPLLAAVLYRRGIRNHEEVRRFLQPHLSDLPDPAALPDS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
GRAVSLVEEVRCRSRPVVVFGDYDVDGLTATTLLAQLFGEFGLTVIPMVPHRLRDGYGFQ
CCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCHHHHCCCCCC
RHHVPGVLEHRPALLVTVDCGTGDWDALRDVLRAGVPVIVLDHHAVHDEAWPDELAFVSV
CCCCCCHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHCCCCCCCCEEEEEE
ARPDAPPVFRTLSAVGVAYQFARLLLGNEAASRWLPLVALGTVADVVPLVGINRTLVALG
CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LKRFWETAPLGLRTLARLSGLDSARGQRLTSWHCGYVLGPRLNAAGRMDDPRLALELLLT
HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEECCCEEECCCCCCCCCCCCHHHHHHHHHH
ADAQRAEELARKLNELNALRQRAIERMLAEAEQRIDALGSLPPVLVLADSAWSVGLVGLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH
ASKLVSRYARPVVLLARESEVSRGSARSIDGFDIAAALARCRDLLIDHGGHHAAAGLTVE
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEEC
TERIAELEARLLEIAAEHLGQEEPALPLELDAELHPYQIALETWEVLAQLEPYGHGNPVP
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
RFLVRDVRAVDITSTQNERHLRFTVVAPDGTVRQAVWFEGGREIARLARAGRIDIAFTLR
HHHHHHHHEEEEECCCCCCEEEEEEECCCCCHHHHHHHCCCHHHHHHHHCCCEEEEEEEE
RSDWNGQERVELDVIDIRPTR
ECCCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]