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The map label for this gene is ygeY [H]

Identifier: 221633030

GI number: 221633030

Start: 1015110

End: 1016333

Strand: Reverse

Name: ygeY [H]

Synonym: trd_1045

Alternate gene names: 221633030

Gene position: 1016333-1015110 (Counterclockwise)

Preceding gene: 221633031

Following gene: 221633029

Centisome position: 50.74

GC content: 62.83

Gene sequence:

>1224_bases
GTGCATGAGGTGATCGATCCGCATCTTCGTGAGCGACTCTGGGCAGCGGGACGGGCGCGACGCGACGAAATGATCGCGTT
CGCGCAACAGCTCGTGCAGACTCGCAGTTTGCCTGGAGAGGAGCAAGCCGTTGCCGAGCTGGTTCTGGCGCGTTTACGCA
CGTTGGGCTTCGATGAGGCGGATCTGGATGCGGCAGGCAATGTCGTGGGAGTCTTACGCGGAAGCAGCGCTGGTAACTCG
GTGCAATTCAATGCTCATTTAGATCATGTGCACGAGGGCGATCCGGCTGCCTGGCGATACCCTCCTTATGCTGGAGTGAT
CGCTGACGGCGTGCTGTACGGCAGGGGCGCGTCTGACGTGAAAGGAGCACTGGCGAGCCAAGTCTATGGTCTCGTCCTTT
TGAGTGACCTGGGCCTCGTTCCCGCGGGTGACTGTTACGTCACTGGAGTCGTCCAAGAAGAGGTTGGCGGAGCGGGTGCT
GCAGCGCTTTGCGAGTGGCTGCGCACCGATATCGTCGTCTTGGGGGAAGCGACGAATCTCGAGTTAAGACGAGGCCATCG
TGGGCGAGTCGGACTGGAAGTCCGTTTCATCGGTCGGTCCGCGCATGCGAGTGCCCCGGAGCGAGGTGTGAACCCGTTGT
TCGCGCTGGGGCGCTTCTTGTGCCGGCTCGACGAACTCCCACGCGGCAGCCATCCGGAATTAGGCCAGAGTTCCGTTGCA
CCGACCCTGGTGTGGACCGATCAATCGAGTGCGAATGTCATCCCTGGGGTGGTGACAGTAGTGCTCGATTGGCGGACAGT
TCCTGGAGAGGACGCGGATGCGCTCCGCGCTGCCGTAGAGGACCTGGCCCGTGCCTGTGCGGGAGACGAGGTCCGGGTGG
AAGTGACGGTGCCCCGGCGGAAGCTCGCGACATATCGGGGACTTGCCATCGAACTCCCGCCGACTCGCGGCTTCGTTCTA
CCGACCGATCATCCGGTAGTGACCGTGGCACGGAGCACATTGAATGCCGTGCTGGCACGTCCGGTTCCGGACGCGTTCTG
GCGTTTCGCCACGGACGGCGGACATTTCATGGCACACGGCATGGCCACCATCGGTTTCGCGCCTGGTGAGGAGCGCCTCG
CGCACACGGTCGACGACAGCATTCGCCTGGCCGATCTGGAAGCAGCGATGGTGGGGTATGCTGCTCTAGCACTGACCTTG
ACGCGCGGGGAGGAGCATGCGTGA

Upstream 100 bases:

>100_bases
GAGCGACTCTGTCGCGTCGACCTCATCGCGGTCACAGTTGATCGGGGCGGTCGAATCGTTCGCTGGAGCCACCTCCTCGG
GTGCGTGAGCGAAGGGGACG

Downstream 100 bases:

>100_bases
GCAGCATCGAACAGCATCGGATGGCAGCACCGCGCAGCGTTCGTTGCGCGGTCGTGACCGTCAGCGACACGCGAACGGTC
GAGACGGATACGAGCGGCGC

Product: deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MHEVIDPHLRERLWAAGRARRDEMIAFAQQLVQTRSLPGEEQAVAELVLARLRTLGFDEADLDAAGNVVGVLRGSSAGNS
VQFNAHLDHVHEGDPAAWRYPPYAGVIADGVLYGRGASDVKGALASQVYGLVLLSDLGLVPAGDCYVTGVVQEEVGGAGA
AALCEWLRTDIVVLGEATNLELRRGHRGRVGLEVRFIGRSAHASAPERGVNPLFALGRFLCRLDELPRGSHPELGQSSVA
PTLVWTDQSSANVIPGVVTVVLDWRTVPGEDADALRAAVEDLARACAGDEVRVEVTVPRRKLATYRGLAIELPPTRGFVL
PTDHPVVTVARSTLNAVLARPVPDAFWRFATDGGHFMAHGMATIGFAPGEERLAHTVDDSIRLADLEAAMVGYAALALTL
TRGEEHA

Sequences:

>Translated_407_residues
MHEVIDPHLRERLWAAGRARRDEMIAFAQQLVQTRSLPGEEQAVAELVLARLRTLGFDEADLDAAGNVVGVLRGSSAGNS
VQFNAHLDHVHEGDPAAWRYPPYAGVIADGVLYGRGASDVKGALASQVYGLVLLSDLGLVPAGDCYVTGVVQEEVGGAGA
AALCEWLRTDIVVLGEATNLELRRGHRGRVGLEVRFIGRSAHASAPERGVNPLFALGRFLCRLDELPRGSHPELGQSSVA
PTLVWTDQSSANVIPGVVTVVLDWRTVPGEDADALRAAVEDLARACAGDEVRVEVTVPRRKLATYRGLAIELPPTRGFVL
PTDHPVVTVARSTLNAVLARPVPDAFWRFATDGGHFMAHGMATIGFAPGEERLAHTVDDSIRLADLEAAMVGYAALALTL
TRGEEHA
>Mature_407_residues
MHEVIDPHLRERLWAAGRARRDEMIAFAQQLVQTRSLPGEEQAVAELVLARLRTLGFDEADLDAAGNVVGVLRGSSAGNS
VQFNAHLDHVHEGDPAAWRYPPYAGVIADGVLYGRGASDVKGALASQVYGLVLLSDLGLVPAGDCYVTGVVQEEVGGAGA
AALCEWLRTDIVVLGEATNLELRRGHRGRVGLEVRFIGRSAHASAPERGVNPLFALGRFLCRLDELPRGSHPELGQSSVA
PTLVWTDQSSANVIPGVVTVVLDWRTVPGEDADALRAAVEDLARACAGDEVRVEVTVPRRKLATYRGLAIELPPTRGFVL
PTDHPVVTVARSTLNAVLARPVPDAFWRFATDGGHFMAHGMATIGFAPGEERLAHTVDDSIRLADLEAAMVGYAALALTL
TRGEEHA

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1789236, Length=394, Percent_Identity=30.2030456852792, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1788816, Length=254, Percent_Identity=27.1653543307087, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790395, Length=386, Percent_Identity=26.1658031088083, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR017706
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 43473; Mature: 43473

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEVIDPHLRERLWAAGRARRDEMIAFAQQLVQTRSLPGEEQAVAELVLARLRTLGFDEA
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
DLDAAGNVVGVLRGSSAGNSVQFNAHLDHVHEGDPAAWRYPPYAGVIADGVLYGRGASDV
CCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHCCEEECCCCHHH
KGALASQVYGLVLLSDLGLVPAGDCYVTGVVQEEVGGAGAAALCEWLRTDIVVLGEATNL
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHCCEEEEECCCCC
ELRRGHRGRVGLEVRFIGRSAHASAPERGVNPLFALGRFLCRLDELPRGSHPELGQSSVA
HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PTLVWTDQSSANVIPGVVTVVLDWRTVPGEDADALRAAVEDLARACAGDEVRVEVTVPRR
CEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
KLATYRGLAIELPPTRGFVLPTDHPVVTVARSTLNAVLARPVPDAFWRFATDGGHFMAHG
HHHHHCCEEEECCCCCCEECCCCCCEEEEHHHHHHHHHHCCCCHHHHHEECCCCCEEECC
MATIGFAPGEERLAHTVDDSIRLADLEAAMVGYAALALTLTRGEEHA
CEEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHEEEECCCCCC
>Mature Secondary Structure
MHEVIDPHLRERLWAAGRARRDEMIAFAQQLVQTRSLPGEEQAVAELVLARLRTLGFDEA
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
DLDAAGNVVGVLRGSSAGNSVQFNAHLDHVHEGDPAAWRYPPYAGVIADGVLYGRGASDV
CCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHCCEEECCCCHHH
KGALASQVYGLVLLSDLGLVPAGDCYVTGVVQEEVGGAGAAALCEWLRTDIVVLGEATNL
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHCCEEEEECCCCC
ELRRGHRGRVGLEVRFIGRSAHASAPERGVNPLFALGRFLCRLDELPRGSHPELGQSSVA
HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PTLVWTDQSSANVIPGVVTVVLDWRTVPGEDADALRAAVEDLARACAGDEVRVEVTVPRR
CEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
KLATYRGLAIELPPTRGFVLPTDHPVVTVARSTLNAVLARPVPDAFWRFATDGGHFMAHG
HHHHHCCEEEECCCCCCEECCCCCCEEEEHHHHHHHHHHCCCCHHHHHEECCCCCEEECC
MATIGFAPGEERLAHTVDDSIRLADLEAAMVGYAALALTLTRGEEHA
CEEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]