| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632862
Identifier: 221632862
GI number: 221632862
Start: 840247
End: 841182
Strand: Reverse
Name: 221632862
Synonym: trd_0859
Alternate gene names: NA
Gene position: 841182-840247 (Counterclockwise)
Preceding gene: 221632869
Following gene: 221632861
Centisome position: 42.0
GC content: 59.72
Gene sequence:
>936_bases ATGGGAGGTGAGGCCATGCGTGTCGGATACGATCGGCCACTGTACATCCTGGCCTTCGATCACCGGAGTTCCTTCGAGGA GCTCGCGGCGAAAGCCGGTGTGCCAGAGAGCGAGCGGGCAGCCAAGATCAGTGAAGCAAAGCGTGTCATTTTCGAGGGCT TCATGGTAGCGGTTGACCGTGGGGCTCCACGTGATGCAGCAGGAATTCTCGTTGACGAGCAGTACGGGGCCGACGTCGCG CGAGCCGCACGAGAACGCGGCTACATTCTCGCGATGCCGGTCGAAAAGAGCGGTCAGAAGGTGTTCGATTTCGAATATGG CGAGCAATTCGGTGAGCACATCCTCGCGTTCGATCCGACCTTCAGTAAAGTTCTGGTCCGTTACAACCCCGATGACTCGC CGGAAACGAAACGCATTCAGCTGGAGCGGCTCAAGCGACTCCACGATTGGCTACGTGAACGCGAACGCCGCTTCTTGCTC GAGTTGCTGGTTCCAGCGACGAAAGAACAACTGGAGGCTGTCGGAGGTGACAGTGAACGATACGATCGCGAAGTGCGACC AGAACTCACGCTGCAGGCGATCGACGAGTTTTATGCAGCGGATATCGTTCCGGACATTTGGAAGATCGAAGGGCTCGATC GTCGAGAAGACTGCGAACGAATGGGTGCGAAGGTTCGAAGCGGTGGGCGCGATGCAGTGAGCTGCGTGGTGCTCGGTCGC GGGGCTGATGCTGCGCGCGTCGACCATTGGTTGCGCATGGCAGCGGGGGTTCCCGGATACGTCGGTTTCGCGATCGGTCG CACGCTCTGGTGGGACGGTGTCCAGGGGTACTTGAATGGCACGCTGACGCGCGAGGTTGCCGCAGAGAAGATCGCAGCGA ATTATCTGCGAGCGATCGACCTCTACGTGTCAGCAGCGCGCGCTCCTGTGGCGTGA
Upstream 100 bases:
>100_bases TCCCCAATGACTGTTGTGATTCTAGCTGACGCGCCACGATCGTGTCAAGGCTTGCACGGAGTGAGCCGGTGCGCTAGCGT TGGATCGAGGTTCGATCAGG
Downstream 100 bases:
>100_bases CCATTTCCCCGATGATCGAAAACGGACGAGAAAGAAGAGGGGCCTGACTGTTTCGAGAGGAGCGGGCCCCTCTGCTCGTT CAATAGAAAAAGCCGGCTCA
Product: putative IolC myo-catabolism protein
Products: NA
Alternate protein names: Carbohydrate Kinase; PfkB Domain Protein; IolC Protein; Myo-Inositol Catabolism Protein; Sugar Kinase; Fructokinase; Myo-Inositol Catabolism IolC Protein; 5-Dehydro-2-Deoxygluconokinase IolC; Myo-Inositol Catabolism IolC; Ribokinase Family Sugar Kinase; Myo-Inositol Catabolism Protein IolC; IolC Myo-Catabolism Protein; Myoinositol Catabolism Protein Sugar Kinase; Transferase Kinase; 5-Dehydro-2-Deoxygluconokinase; 5-Keto-2-Deoxygluconokinase/ Domain-Containing Protein; Transferase Kinase Protein; Carbohydrate Kinase PfkB
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MGGEAMRVGYDRPLYILAFDHRSSFEELAAKAGVPESERAAKISEAKRVIFEGFMVAVDRGAPRDAAGILVDEQYGADVA RAARERGYILAMPVEKSGQKVFDFEYGEQFGEHILAFDPTFSKVLVRYNPDDSPETKRIQLERLKRLHDWLRERERRFLL ELLVPATKEQLEAVGGDSERYDREVRPELTLQAIDEFYAADIVPDIWKIEGLDRREDCERMGAKVRSGGRDAVSCVVLGR GADAARVDHWLRMAAGVPGYVGFAIGRTLWWDGVQGYLNGTLTREVAAEKIAANYLRAIDLYVSAARAPVA
Sequences:
>Translated_311_residues MGGEAMRVGYDRPLYILAFDHRSSFEELAAKAGVPESERAAKISEAKRVIFEGFMVAVDRGAPRDAAGILVDEQYGADVA RAARERGYILAMPVEKSGQKVFDFEYGEQFGEHILAFDPTFSKVLVRYNPDDSPETKRIQLERLKRLHDWLRERERRFLL ELLVPATKEQLEAVGGDSERYDREVRPELTLQAIDEFYAADIVPDIWKIEGLDRREDCERMGAKVRSGGRDAVSCVVLGR GADAARVDHWLRMAAGVPGYVGFAIGRTLWWDGVQGYLNGTLTREVAAEKIAANYLRAIDLYVSAARAPVA >Mature_310_residues GGEAMRVGYDRPLYILAFDHRSSFEELAAKAGVPESERAAKISEAKRVIFEGFMVAVDRGAPRDAAGILVDEQYGADVAR AARERGYILAMPVEKSGQKVFDFEYGEQFGEHILAFDPTFSKVLVRYNPDDSPETKRIQLERLKRLHDWLRERERRFLLE LLVPATKEQLEAVGGDSERYDREVRPELTLQAIDEFYAADIVPDIWKIEGLDRREDCERMGAKVRSGGRDAVSCVVLGRG ADAARVDHWLRMAAGVPGYVGFAIGRTLWWDGVQGYLNGTLTREVAAEKIAANYLRAIDLYVSAARAPVA
Specific function: Unknown
COG id: COG3892
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34857; Mature: 34726
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGEAMRVGYDRPLYILAFDHRSSFEELAAKAGVPESERAAKISEAKRVIFEGFMVAVDR CCCCCEEECCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEECC GAPRDAAGILVDEQYGADVARAARERGYILAMPVEKSGQKVFDFEYGEQFGEHILAFDPT CCCCCCCCEEEECCCCCHHHHHHHHCCCEEEECCCCCCCEEEEEHHHHHHCCEEEEECCC FSKVLVRYNPDDSPETKRIQLERLKRLHDWLRERERRFLLELLVPATKEQLEAVGGDSER HHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHH YDREVRPELTLQAIDEFYAADIVPDIWKIEGLDRREDCERMGAKVRSGGRDAVSCVVLGR HCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEC GADAARVDHWLRMAAGVPGYVGFAIGRTLWWDGVQGYLNGTLTREVAAEKIAANYLRAID CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHH LYVSAARAPVA HHHHHHCCCCC >Mature Secondary Structure GGEAMRVGYDRPLYILAFDHRSSFEELAAKAGVPESERAAKISEAKRVIFEGFMVAVDR CCCCEEECCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEECC GAPRDAAGILVDEQYGADVARAARERGYILAMPVEKSGQKVFDFEYGEQFGEHILAFDPT CCCCCCCCEEEECCCCCHHHHHHHHCCCEEEECCCCCCCEEEEEHHHHHHCCEEEEECCC FSKVLVRYNPDDSPETKRIQLERLKRLHDWLRERERRFLLELLVPATKEQLEAVGGDSER HHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHH YDREVRPELTLQAIDEFYAADIVPDIWKIEGLDRREDCERMGAKVRSGGRDAVSCVVLGR HCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEC GADAARVDHWLRMAAGVPGYVGFAIGRTLWWDGVQGYLNGTLTREVAAEKIAANYLRAID CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHH LYVSAARAPVA HHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA