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The map label for this gene is yahF [H]

Identifier: 221632598

GI number: 221632598

Start: 571841

End: 573385

Strand: Reverse

Name: yahF [H]

Synonym: trd_0573

Alternate gene names: 221632598

Gene position: 573385-571841 (Counterclockwise)

Preceding gene: 221632599

Following gene: 221632597

Centisome position: 28.63

GC content: 64.21

Gene sequence:

>1545_bases
ATGGTAGTCCGGATTCGGATCGAGCCTAATTCGTACTTCGATTCGGTGGCGTTGATGGCTGTCGCATCGGTAGTTAACCG
GTTGCCCGGCGTCGATTTGGCCGCACTCCTCATGGGTACGAGTGCCAATCTGGAACTCCTTCGCGATTCAGGTCTTTGGG
ACGAGCGCCTCGAGACTGTATCCCCCAACGATCTGGTGATCGCCGTTCGCGCTAGCGACGATGCCGCCGCTGAGCGAGCG
ATCGACGAAGCGGTGCACCGGCTCCGCTCGTCCGCTCGCACCAGCCAGGTGAGCGAAGCGAAGGTCACTTTGCGCACCCT
GCGGACAGCACTCCGGCAAGTTTCCCAGGCCAGTGTGGTCGCGATTTCGGTACCCGGTCCCTATGCACCGATCGAGGCCG
AGGAAGCGCTGCGTGCTGATCGCCACGTCTTTCTCTTCAGCGACAACGTGCCGATCGAGGAAGAGGTTCGCCTGAAAGAA
TTAGCTCAGGAACGCGGCCTGCTGCTCATGGGACCGGACTGTGGGACGGCCTTCATCGCCGGACTCGGTCTCGGCTTCAT
GAATGCCGTACGACGCGGCCCGATCGGTATCGTTGCCGCAGCGGGAACCGGGTTGCAGCAGCTCGCCAGTCTGATCGATT
GGTTCGGCTCCGGCATCAGCCACGGCATCGGCACCGGTGGACGAGACCTCGACGCCCGAGTCGGCGGACGTACCATGCTG
GCCGGTCTCGAGGCACTCGCTCATGACCCGGCAACACAGGTCATCGTGCTCGTCTCCAAGCCGCCAGCTCCCGAGGTCGC
GGAAAAGGTTCTCGCCTTCGCTGCTGCGTGCGGAAAGCCGGTCGTCGCGACATTCATCGGCCAGACAGCTCCTGTCACAG
AGGGCGTTCATGTGGCCGCGAACCTCACGGAAGCGGCGCGTCTCGCCGTGCATCTGGCGACCGGCCAGTCTCTCGCGGAC
CTCGACCTGCCACGTCGCCAAGAGGCGCTCGCCCGCGTTCGCGCCGAGCGGTCGCGCCTCGCCCCGACCCAACGCTATCT
GCGTGGGCTGTACAGTGGGGGAACACTCTGCGACGAAGCGATGGTCTTGCTCCAACCCCGGATCGGCCCGATTCGCTCCA
ATATCCCTTTGCAGCCGGAACTGCGCCTGACCGATCCGCACCGCAGCGAGGAGCACACGTTCGTCGACCTGGGCTCCGAC
GAGTTCACGGTCGGTCGCCCACATCCCATGATCGACCAGACGATCCGGCTCGAGCGCTTCCGCCGGGAGGCGGCCGATCC
CACGGTTGCCGGTATCGTGCTCGATCTCGTCCTCGGTTATGGCGCAGCGAGTGACCCTGCTGCGGAGTTGGCACCGGCCA
TTCGGGAGGCACGGGTAGAGGCCGAGCGAACCGGTCGCATTCTTCCGTGTATCGTCGCACTCGTCGGGACACAGTCCGAT
CCGCAGGACTATGCGCGCCAGCGTCGCACTTTGGAAGATGCTGGAGCGATCGTCGTTCCGAGCAACGCTTTGGCAGCTGA
GCTTGCCGCCGAATTGATCGCGTGA

Upstream 100 bases:

>100_bases
ACGTCGACCGACAAGCGGGTCACAGGAGAACGGCCAGCCTGGGCAGACAACCAGGTTGGCCGGGTCGCTTTTTCTTTCCA
TCACCGGAAGGGGAGGTGAC

Downstream 100 bases:

>100_bases
TCGACGCAGGAGGAGCCGAGCGATGGACGGAATGCACGAGAAAGTGCAAAAGCTTCTCGAGACCACACCCGCAGTCATCA
ACGTCGGGCTCGACCTCTTC

Product: protein fdrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MVVRIRIEPNSYFDSVALMAVASVVNRLPGVDLAALLMGTSANLELLRDSGLWDERLETVSPNDLVIAVRASDDAAAERA
IDEAVHRLRSSARTSQVSEAKVTLRTLRTALRQVSQASVVAISVPGPYAPIEAEEALRADRHVFLFSDNVPIEEEVRLKE
LAQERGLLLMGPDCGTAFIAGLGLGFMNAVRRGPIGIVAAAGTGLQQLASLIDWFGSGISHGIGTGGRDLDARVGGRTML
AGLEALAHDPATQVIVLVSKPPAPEVAEKVLAFAAACGKPVVATFIGQTAPVTEGVHVAANLTEAARLAVHLATGQSLAD
LDLPRRQEALARVRAERSRLAPTQRYLRGLYSGGTLCDEAMVLLQPRIGPIRSNIPLQPELRLTDPHRSEEHTFVDLGSD
EFTVGRPHPMIDQTIRLERFRREAADPTVAGIVLDLVLGYGAASDPAAELAPAIREARVEAERTGRILPCIVALVGTQSD
PQDYARQRRTLEDAGAIVVPSNALAAELAAELIA

Sequences:

>Translated_514_residues
MVVRIRIEPNSYFDSVALMAVASVVNRLPGVDLAALLMGTSANLELLRDSGLWDERLETVSPNDLVIAVRASDDAAAERA
IDEAVHRLRSSARTSQVSEAKVTLRTLRTALRQVSQASVVAISVPGPYAPIEAEEALRADRHVFLFSDNVPIEEEVRLKE
LAQERGLLLMGPDCGTAFIAGLGLGFMNAVRRGPIGIVAAAGTGLQQLASLIDWFGSGISHGIGTGGRDLDARVGGRTML
AGLEALAHDPATQVIVLVSKPPAPEVAEKVLAFAAACGKPVVATFIGQTAPVTEGVHVAANLTEAARLAVHLATGQSLAD
LDLPRRQEALARVRAERSRLAPTQRYLRGLYSGGTLCDEAMVLLQPRIGPIRSNIPLQPELRLTDPHRSEEHTFVDLGSD
EFTVGRPHPMIDQTIRLERFRREAADPTVAGIVLDLVLGYGAASDPAAELAPAIREARVEAERTGRILPCIVALVGTQSD
PQDYARQRRTLEDAGAIVVPSNALAAELAAELIA
>Mature_514_residues
MVVRIRIEPNSYFDSVALMAVASVVNRLPGVDLAALLMGTSANLELLRDSGLWDERLETVSPNDLVIAVRASDDAAAERA
IDEAVHRLRSSARTSQVSEAKVTLRTLRTALRQVSQASVVAISVPGPYAPIEAEEALRADRHVFLFSDNVPIEEEVRLKE
LAQERGLLLMGPDCGTAFIAGLGLGFMNAVRRGPIGIVAAAGTGLQQLASLIDWFGSGISHGIGTGGRDLDARVGGRTML
AGLEALAHDPATQVIVLVSKPPAPEVAEKVLAFAAACGKPVVATFIGQTAPVTEGVHVAANLTEAARLAVHLATGQSLAD
LDLPRRQEALARVRAERSRLAPTQRYLRGLYSGGTLCDEAMVLLQPRIGPIRSNIPLQPELRLTDPHRSEEHTFVDLGSD
EFTVGRPHPMIDQTIRLERFRREAADPTVAGIVLDLVLGYGAASDPAAELAPAIREARVEAERTGRILPCIVALVGTQSD
PQDYARQRRTLEDAGAIVVPSNALAAELAAELIA

Specific function: Unknown

COG id: COG0074

COG function: function code C; Succinyl-CoA synthetase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli fdrA and some, to bacterial sucD [H]

Homologues:

Organism=Escherichia coli, GI1786513, Length=517, Percent_Identity=45.4545454545455, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI1786729, Length=517, Percent_Identity=40.0386847195358, Blast_Score=324, Evalue=7e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003781
- InterPro:   IPR005811
- InterPro:   IPR016102 [H]

Pfam domain/function: PF02629 CoA_binding; PF00549 Ligase_CoA [H]

EC number: NA

Molecular weight: Translated: 54755; Mature: 54755

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVRIRIEPNSYFDSVALMAVASVVNRLPGVDLAALLMGTSANLELLRDSGLWDERLETV
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHCC
SPNDLVIAVRASDDAAAERAIDEAVHRLRSSARTSQVSEAKVTLRTLRTALRQVSQASVV
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AISVPGPYAPIEAEEALRADRHVFLFSDNVPIEEEVRLKELAQERGLLLMGPDCGTAFIA
EEECCCCCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHH
GLGLGFMNAVRRGPIGIVAAAGTGLQQLASLIDWFGSGISHGIGTGGRDLDARVGGRTML
HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCHHHHCCCCCCCCCHHHCCCHHHH
AGLEALAHDPATQVIVLVSKPPAPEVAEKVLAFAAACGKPVVATFIGQTAPVTEGVHVAA
HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEH
NLTEAARLAVHLATGQSLADLDLPRRQEALARVRAERSRLAPTQRYLRGLYSGGTLCDEA
HHHHHHHHEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHH
MVLLQPRIGPIRSNIPLQPELRLTDPHRSEEHTFVDLGSDEFTVGRPHPMIDQTIRLERF
HHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCEECCCCCCHHHHHHHHHHH
RREAADPTVAGIVLDLVLGYGAASDPAAELAPAIREARVEAERTGRILPCIVALVGTQSD
HHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
PQDYARQRRTLEDAGAIVVPSNALAAELAAELIA
HHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCC
>Mature Secondary Structure
MVVRIRIEPNSYFDSVALMAVASVVNRLPGVDLAALLMGTSANLELLRDSGLWDERLETV
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHCC
SPNDLVIAVRASDDAAAERAIDEAVHRLRSSARTSQVSEAKVTLRTLRTALRQVSQASVV
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AISVPGPYAPIEAEEALRADRHVFLFSDNVPIEEEVRLKELAQERGLLLMGPDCGTAFIA
EEECCCCCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHH
GLGLGFMNAVRRGPIGIVAAAGTGLQQLASLIDWFGSGISHGIGTGGRDLDARVGGRTML
HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCHHHHCCCCCCCCCHHHCCCHHHH
AGLEALAHDPATQVIVLVSKPPAPEVAEKVLAFAAACGKPVVATFIGQTAPVTEGVHVAA
HHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEH
NLTEAARLAVHLATGQSLADLDLPRRQEALARVRAERSRLAPTQRYLRGLYSGGTLCDEA
HHHHHHHHEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHH
MVLLQPRIGPIRSNIPLQPELRLTDPHRSEEHTFVDLGSDEFTVGRPHPMIDQTIRLERF
HHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCEECCCCCCHHHHHHHHHHH
RREAADPTVAGIVLDLVLGYGAASDPAAELAPAIREARVEAERTGRILPCIVALVGTQSD
HHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
PQDYARQRRTLEDAGAIVVPSNALAAELAAELIA
HHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]