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The map label for this gene is nodJ [H]

Identifier: 221632573

GI number: 221632573

Start: 541089

End: 541949

Strand: Reverse

Name: nodJ [H]

Synonym: trd_0548

Alternate gene names: 221632573

Gene position: 541949-541089 (Counterclockwise)

Preceding gene: 221632574

Following gene: 221632572

Centisome position: 27.06

GC content: 60.05

Gene sequence:

>861_bases
ATGGCGTCGATCGAACTCACCGAGCCAGTCCGACCACCCTCACCGCTTCTGCGCGCCTCGATCGGCGTGCTCACGCTCTG
GCAACGAGACCTTCTTCGCTTCTGGCGCGACCGGACTCGCATCGCTGGCGGGCTCGCTCAACCCCTGCTGTTCTTGGCCA
TCTTCGGCGCAGGTCTCTCCCCCTGGATGGGTAATCTCGGCGGAACGATGTTCGGACCGGACTACTTGCAGTTTTTGTAT
CCCGGCATCATCGGCATGTCGGTCCTCTTCTCGTCGATCTTCAGCGCCGTTTCCGTCGTCTGGGATCGGGAGTTCGGTTT
CCTCAAAGAACTCCTGGTCGCACCGATACCGCGCTGGTCGATCGTCATCGGAAAGGCCCTGGGTGGAAGCTCGACCGCGA
TGTTCCAGGGGCTTCTCCTTCTGATCCTGGCCCCCGTGATCGGCGTCAGACTCTCCCTCAGTACGATCCTCCTCTTGATC
CCTCTTCTTTTTCTTCTCGCCTTCTCGCTCTCCAGCATCGGTCTGGTGATTGCAGCACGAATGCGTTCGACAGAGGGGTT
CGGACTGATCATGAACTTCCTGGTTACTCCACTGCTCTTCTTGTCGGGGGCTCTCTACCCGCTCAACAATTTGCCCACCT
GGTTACTTATCCTGACACGCCTCGATCCGGTCACCTACGGTATCGACGCCATCAGGCGCGTCGTCCTCTCCTCATCGGGC
GTTCCCCAACCAGTTATCGATCAGCTCGGTGTGACGCTCTTCGGCCACCCGCTGGATCCGCTCACTGATGCAGCTGTCGT
GCTCGGCTTAGGACTGGTGCTCATCACCGTCGCGGCTCGCCAGTTCGCTCGACCGGACTGA

Upstream 100 bases:

>100_bases
TTTGACTGGCAGACAGATCCGCGACGAAGAACCCTCGAGCCTCGATCAGCTGCGCGAACGGATACGAGCCAGGCGTTGAA
GATCGAAAGGACGCGCTGCT

Downstream 100 bases:

>100_bases
GAAGTGAGAGGAGGACACGCCGTGCTCTATACCGGCAAAGGGGACCAGGGGTATACCGACCTCCTGGGTGGTCGCGTCCC
GAAGTATGCTCCACGTCCCG

Product: ABC-2 type transporter superfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MASIELTEPVRPPSPLLRASIGVLTLWQRDLLRFWRDRTRIAGGLAQPLLFLAIFGAGLSPWMGNLGGTMFGPDYLQFLY
PGIIGMSVLFSSIFSAVSVVWDREFGFLKELLVAPIPRWSIVIGKALGGSSTAMFQGLLLLILAPVIGVRLSLSTILLLI
PLLFLLAFSLSSIGLVIAARMRSTEGFGLIMNFLVTPLLFLSGALYPLNNLPTWLLILTRLDPVTYGIDAIRRVVLSSSG
VPQPVIDQLGVTLFGHPLDPLTDAAVVLGLGLVLITVAARQFARPD

Sequences:

>Translated_286_residues
MASIELTEPVRPPSPLLRASIGVLTLWQRDLLRFWRDRTRIAGGLAQPLLFLAIFGAGLSPWMGNLGGTMFGPDYLQFLY
PGIIGMSVLFSSIFSAVSVVWDREFGFLKELLVAPIPRWSIVIGKALGGSSTAMFQGLLLLILAPVIGVRLSLSTILLLI
PLLFLLAFSLSSIGLVIAARMRSTEGFGLIMNFLVTPLLFLSGALYPLNNLPTWLLILTRLDPVTYGIDAIRRVVLSSSG
VPQPVIDQLGVTLFGHPLDPLTDAAVVLGLGLVLITVAARQFARPD
>Mature_285_residues
ASIELTEPVRPPSPLLRASIGVLTLWQRDLLRFWRDRTRIAGGLAQPLLFLAIFGAGLSPWMGNLGGTMFGPDYLQFLYP
GIIGMSVLFSSIFSAVSVVWDREFGFLKELLVAPIPRWSIVIGKALGGSSTAMFQGLLLLILAPVIGVRLSLSTILLLIP
LLFLLAFSLSSIGLVIAARMRSTEGFGLIMNFLVTPLLFLSGALYPLNNLPTWLLILTRLDPVTYGIDAIRRVVLSSSGV
PQPVIDQLGVTLFGHPLDPLTDAAVVLGLGLVLITVAARQFARPD

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=219, Percent_Identity=28.310502283105, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787010, Length=170, Percent_Identity=30, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30932; Mature: 30800

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIELTEPVRPPSPLLRASIGVLTLWQRDLLRFWRDRTRIAGGLAQPLLFLAIFGAGLS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PWMGNLGGTMFGPDYLQFLYPGIIGMSVLFSSIFSAVSVVWDREFGFLKELLVAPIPRWS
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IVIGKALGGSSTAMFQGLLLLILAPVIGVRLSLSTILLLIPLLFLLAFSLSSIGLVIAAR
HHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRSTEGFGLIMNFLVTPLLFLSGALYPLNNLPTWLLILTRLDPVTYGIDAIRRVVLSSSG
HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
VPQPVIDQLGVTLFGHPLDPLTDAAVVLGLGLVLITVAARQFARPD
CCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ASIELTEPVRPPSPLLRASIGVLTLWQRDLLRFWRDRTRIAGGLAQPLLFLAIFGAGLS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PWMGNLGGTMFGPDYLQFLYPGIIGMSVLFSSIFSAVSVVWDREFGFLKELLVAPIPRWS
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IVIGKALGGSSTAMFQGLLLLILAPVIGVRLSLSTILLLIPLLFLLAFSLSSIGLVIAAR
HHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRSTEGFGLIMNFLVTPLLFLSGALYPLNNLPTWLLILTRLDPVTYGIDAIRRVVLSSSG
HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
VPQPVIDQLGVTLFGHPLDPLTDAAVVLGLGLVLITVAARQFARPD
CCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]