| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632491
Identifier: 221632491
GI number: 221632491
Start: 461093
End: 461632
Strand: Reverse
Name: 221632491
Synonym: trd_0465
Alternate gene names: NA
Gene position: 461632-461093 (Counterclockwise)
Preceding gene: 221632492
Following gene: 221632490
Centisome position: 23.05
GC content: 62.59
Gene sequence:
>540_bases ATGGCGATCCGTGAAGTTCTCGGGCTGTACCGTGATCTCGACTCAGCTGTTGCCGCAGCTGACGCGCTGCGTGATGCCGG CTTCAGTCGCAGCGAGTTCGAAGTGCTCTCCAATGCTCCGTATCCCGAAGGGACCTTTGGGGAAGAATCCGGAATCCACC GGCTCTTCGTCTTCCCCCTGATCGGGGCTGCCTGTGGTTTCGCCGCGGGACTGCTCATCACTGGCGGCACGCAGCTTTCC TATCCGCTCCTCACTGGAGGCAAGCCGCTGCTTTCGATTCCGCCGATGATCATCATCATGTACGAGGGTACCATGCTGGG CGCTCTGATCTTCACCGTACTCGGCGTTCTCTTCGAGTCTCGGCTTCCCTGGATCGGTCGCGCGCTCTACGATCCACGCA TCACCCAGGGCTATATCGGCATCCTGGTGCGCACCGCACCGGAGCGTGAAGCCCGCGCGATCGAGGCGCTCCGGAAGGCG AATCCCGAGGACATTCTGACCGAGAGCGGGAACGCCGGACGGCAACCGGCGCGGAGCTAG
Upstream 100 bases:
>100_bases CCAGCACTTCGCCCAGCAGCTGCGAGTCGGTAAGCGTGTCGTCAACGCGATCGTGCGGGAGTTTTAGTCGGGCAGGCAGG CAAGGGAAAGCGAGGCGACG
Downstream 100 bases:
>100_bases CGGAGACGAAGGAGATGCGGAGAATGGCACGAAGTCCCATCCGCTCGAAAACCGCACGTCGCCTCGTGCTCGGCCTCCTG GCCGGCACGGCGCTGGCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MAIREVLGLYRDLDSAVAAADALRDAGFSRSEFEVLSNAPYPEGTFGEESGIHRLFVFPLIGAACGFAAGLLITGGTQLS YPLLTGGKPLLSIPPMIIIMYEGTMLGALIFTVLGVLFESRLPWIGRALYDPRITQGYIGILVRTAPEREARAIEALRKA NPEDILTESGNAGRQPARS
Sequences:
>Translated_179_residues MAIREVLGLYRDLDSAVAAADALRDAGFSRSEFEVLSNAPYPEGTFGEESGIHRLFVFPLIGAACGFAAGLLITGGTQLS YPLLTGGKPLLSIPPMIIIMYEGTMLGALIFTVLGVLFESRLPWIGRALYDPRITQGYIGILVRTAPEREARAIEALRKA NPEDILTESGNAGRQPARS >Mature_178_residues AIREVLGLYRDLDSAVAAADALRDAGFSRSEFEVLSNAPYPEGTFGEESGIHRLFVFPLIGAACGFAAGLLITGGTQLSY PLLTGGKPLLSIPPMIIIMYEGTMLGALIFTVLGVLFESRLPWIGRALYDPRITQGYIGILVRTAPEREARAIEALRKAN PEDILTESGNAGRQPARS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19239; Mature: 19107
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIREVLGLYRDLDSAVAAADALRDAGFSRSEFEVLSNAPYPEGTFGEESGIHRLFVFPL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH IGAACGFAAGLLITGGTQLSYPLLTGGKPLLSIPPMIIIMYEGTMLGALIFTVLGVLFES HHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH RLPWIGRALYDPRITQGYIGILVRTAPEREARAIEALRKANPEDILTESGNAGRQPARS CCCHHHHHHCCCCCCCHHEEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC >Mature Secondary Structure AIREVLGLYRDLDSAVAAADALRDAGFSRSEFEVLSNAPYPEGTFGEESGIHRLFVFPL CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH IGAACGFAAGLLITGGTQLSYPLLTGGKPLLSIPPMIIIMYEGTMLGALIFTVLGVLFES HHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH RLPWIGRALYDPRITQGYIGILVRTAPEREARAIEALRKANPEDILTESGNAGRQPARS CCCHHHHHHCCCCCCCHHEEEEEECCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA