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The map label for this gene is ycdM [C]

Identifier: 221632440

GI number: 221632440

Start: 410967

End: 411905

Strand: Reverse

Name: ycdM [C]

Synonym: trd_0412

Alternate gene names: 221632440

Gene position: 411905-410967 (Counterclockwise)

Preceding gene: 221632441

Following gene: 221632439

Centisome position: 20.56

GC content: 63.37

Gene sequence:

>939_bases
ATGCCGGGGATGCAGTTCGGGATTCATGTCGGTCCGCAAAACACGACGACTGACGAACTCCGCCAACTCTGGCGCTTCGC
TGATGCCCATGGTTTCTCCTGGTTTTCGGTCTGGGATCACTTTTATGCCCGGACATCCGACCGCATCCCACACTACGAGG
CTGTCGCCCTGCTCGCTGCACTCGCTTGCGATACCCAGCGCATCCGGTTCGGTTGTATGGTTTTCGCCGTTCAGTTCCGC
AACATCGGCCTGCTGGCCAAATCGATCGTGACCATCGATCACTTGAGCAACGGGCGATTGGAGGTCGGGCTGGGCGCTGG
CTGGCACGAGCCGGAATATCGCGCCTTTGGCTACCCGTTCCTGTCCGATCGCGAGCGACTCGATCAGCTGGAAGAAGGAA
TCACGGCCTTGCGCCGGCTCCTCCAGGAAGATGCGGTGACGTTCGAGGGTCGCTGGATTCAGCTCCGTGAGGCCCGCGTC
TATCCCAAACCGCTCCAGCCGAGGCTGCCGCTGTGGATCGGCGGTGCCGGTGAGCGCCGGACAGCCCGCATCGCGGCACG
ACATGCCGATGGCTGGAACATTCCTTACGTCAGCCCGGAAGGCTTCCGCCAGAAGCGAGCAGCACTGGAGCACTGGTGCG
AGGTCGAAGGGCGCGACCCCGCGACGCTCCAGATCGCCGTTCAGGTCGGGCTCTACATGGCCACGGAAGACGACGAGCGA
ACCGTGTCCCGTCTCCGTGAGCGACTGGTCGAACAGGTCGGGCCCCAAGCACTCGAACAGCCAGGCTGGCTCATCGGTGG
CCCCGACCGTATCAGCGCACTGCTCGCGGAGTATCATGCGGCTGGAGCGGACTGGATCAACGTGACGGTTCGACCACCGG
TCGATTTCGAGGCGCTCCAGGCGTTCGTCGAACGCGTGATGCCGCACTTCGCGAGCTGA

Upstream 100 bases:

>100_bases
CAAGCTCCGCAAACTGCTCTCGGCCGCCCATAGCCAAGGGAACCGATCCGCGGTAGCATGATTCGCGAGAACGGACCCTG
AATCGGGAAAGAGGCGCGGT

Downstream 100 bases:

>100_bases
CCCTTCTGAATAGTCGGCCTGCGGGAGACACCTCTCCGTCTCGCGGTGCCCTCCAGGGCATCAGCCCGCGCGCTGCCGCA
CGTTGCCGTCGCCACGACCT

Product: luciferase-like monooxygenase superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MPGMQFGIHVGPQNTTTDELRQLWRFADAHGFSWFSVWDHFYARTSDRIPHYEAVALLAALACDTQRIRFGCMVFAVQFR
NIGLLAKSIVTIDHLSNGRLEVGLGAGWHEPEYRAFGYPFLSDRERLDQLEEGITALRRLLQEDAVTFEGRWIQLREARV
YPKPLQPRLPLWIGGAGERRTARIAARHADGWNIPYVSPEGFRQKRAALEHWCEVEGRDPATLQIAVQVGLYMATEDDER
TVSRLRERLVEQVGPQALEQPGWLIGGPDRISALLAEYHAAGADWINVTVRPPVDFEALQAFVERVMPHFAS

Sequences:

>Translated_312_residues
MPGMQFGIHVGPQNTTTDELRQLWRFADAHGFSWFSVWDHFYARTSDRIPHYEAVALLAALACDTQRIRFGCMVFAVQFR
NIGLLAKSIVTIDHLSNGRLEVGLGAGWHEPEYRAFGYPFLSDRERLDQLEEGITALRRLLQEDAVTFEGRWIQLREARV
YPKPLQPRLPLWIGGAGERRTARIAARHADGWNIPYVSPEGFRQKRAALEHWCEVEGRDPATLQIAVQVGLYMATEDDER
TVSRLRERLVEQVGPQALEQPGWLIGGPDRISALLAEYHAAGADWINVTVRPPVDFEALQAFVERVMPHFAS
>Mature_311_residues
PGMQFGIHVGPQNTTTDELRQLWRFADAHGFSWFSVWDHFYARTSDRIPHYEAVALLAALACDTQRIRFGCMVFAVQFRN
IGLLAKSIVTIDHLSNGRLEVGLGAGWHEPEYRAFGYPFLSDRERLDQLEEGITALRRLLQEDAVTFEGRWIQLREARVY
PKPLQPRLPLWIGGAGERRTARIAARHADGWNIPYVSPEGFRQKRAALEHWCEVEGRDPATLQIAVQVGLYMATEDDERT
VSRLRERLVEQVGPQALEQPGWLIGGPDRISALLAEYHAAGADWINVTVRPPVDFEALQAFVERVMPHFAS

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=216, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 35468; Mature: 35337

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGMQFGIHVGPQNTTTDELRQLWRFADAHGFSWFSVWDHFYARTSDRIPHYEAVALLAA
CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LACDTQRIRFGCMVFAVQFRNIGLLAKSIVTIDHLSNGRLEVGLGAGWHEPEYRAFGYPF
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
LSDRERLDQLEEGITALRRLLQEDAVTFEGRWIQLREARVYPKPLQPRLPLWIGGAGERR
CCCHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCCCCCCCEEECCCCCCH
TARIAARHADGWNIPYVSPEGFRQKRAALEHWCEVEGRDPATLQIAVQVGLYMATEDDER
HHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCHHH
TVSRLRERLVEQVGPQALEQPGWLIGGPDRISALLAEYHAAGADWINVTVRPPVDFEALQ
HHHHHHHHHHHHHCHHHHHCCCCEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHH
AFVERVMPHFAS
HHHHHHHHHHCC
>Mature Secondary Structure 
PGMQFGIHVGPQNTTTDELRQLWRFADAHGFSWFSVWDHFYARTSDRIPHYEAVALLAA
CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LACDTQRIRFGCMVFAVQFRNIGLLAKSIVTIDHLSNGRLEVGLGAGWHEPEYRAFGYPF
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
LSDRERLDQLEEGITALRRLLQEDAVTFEGRWIQLREARVYPKPLQPRLPLWIGGAGERR
CCCHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCCCCCCCEEECCCCCCH
TARIAARHADGWNIPYVSPEGFRQKRAALEHWCEVEGRDPATLQIAVQVGLYMATEDDER
HHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCHHH
TVSRLRERLVEQVGPQALEQPGWLIGGPDRISALLAEYHAAGADWINVTVRPPVDFEALQ
HHHHHHHHHHHHHCHHHHHCCCCEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHH
AFVERVMPHFAS
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]