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The map label for this gene is exoX [C]

Identifier: 221632413

GI number: 221632413

Start: 385915

End: 386487

Strand: Reverse

Name: exoX [C]

Synonym: trd_0385

Alternate gene names: 221632413

Gene position: 386487-385915 (Counterclockwise)

Preceding gene: 221632414

Following gene: 221632412

Centisome position: 19.3

GC content: 66.32

Gene sequence:

>573_bases
GTGGACAGGCGACGATGCGCCCAGGCCTGGGCGCGAGCCATCTGCTCCAGTTCCGGGGTCGTGATCCTCGATACGGAGAC
GACCGGCATCAGAAGCCAGGACCAGGTCATCGAACTCGCCGTCTTGGACACGCACGGGAACGTTCTACTGGAGACATTGG
TCAAGCCGAGCTGCCCTATCGATCCGGCCGCACTGCGGGTGCATGGGCTGAGTGAGGCGCATCTCGCCCATGCACCCGAG
TGGCCGGTCGTTTACCGTGAACTCCGAGTGATCTTCGACCGCGCGAGGCTGATCGTGACCTACAACGCACCATTCGATCG
CCGCTTGATCGAGCAAACCTGCCGATGCTATGGCCTCAGCTTGCCCGACCTGTCGTGGGACTGCGCCATGCGCCGCTTCG
CCGAGTACGCCGGCCCACCGCCGACCGAATCCTGGCGCAACTACCATCGCTTGAGCGAAGCGCTCCAACGCCTCGGCATC
CCGCACCCCGGCGCGCATCGGGCAGCCGCCGACGCCGAGGCCTGCCGCCGTCTCGTCCGGGCGATGGCTGCTGGCCAGCC
ACTCCGCTTCTGA

Upstream 100 bases:

>100_bases
CGCACGCCTTCGCCAAAGCGGTCGAGGAGCAGACCAGCGCTCGCTGCGTCGTGTTGCAACCCGGCGAGCAGCTCGTCCTC
GAGTGAGGAGATCGCAGCGT

Downstream 100 bases:

>100_bases
GCACGCGCACCGCGTACCATTGAAGCGCGGGACTCATTTGGTGGGAGACAGCAGCCGCGACGATGGACGAGAAACAGCGT
GACGACGCCGAAACCGCGAC

Product: putative DNA polymerase III, epsilon chain

Products: NA

Alternate protein names: Exonuclease; DNA-Directed DNA Polymerase; DNA Polymerase III Epsilon Chain; DNA Polymerase III Subunit Epsilon; DNA Polymerase III Alpha Subunit; Transposase; Orf81 Bacteriophage; DNA Polymerase III Fragment; Exoribonuclease YacC; Exonuclease X; Bacteriophage

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MDRRRCAQAWARAICSSSGVVILDTETTGIRSQDQVIELAVLDTHGNVLLETLVKPSCPIDPAALRVHGLSEAHLAHAPE
WPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLSWDCAMRRFAEYAGPPPTESWRNYHRLSEALQRLGI
PHPGAHRAAADAEACRRLVRAMAAGQPLRF

Sequences:

>Translated_190_residues
MDRRRCAQAWARAICSSSGVVILDTETTGIRSQDQVIELAVLDTHGNVLLETLVKPSCPIDPAALRVHGLSEAHLAHAPE
WPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLSWDCAMRRFAEYAGPPPTESWRNYHRLSEALQRLGI
PHPGAHRAAADAEACRRLVRAMAAGQPLRF
>Mature_190_residues
MDRRRCAQAWARAICSSSGVVILDTETTGIRSQDQVIELAVLDTHGNVLLETLVKPSCPIDPAALRVHGLSEAHLAHAPE
WPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLSLPDLSWDCAMRRFAEYAGPPPTESWRNYHRLSEALQRLGI
PHPGAHRAAADAEACRRLVRAMAAGQPLRF

Specific function: Capable Of Degrading Both Single-Strand And Double- Strand DNA With 3' To 5' Polarity. Has Higher Affinity For ssDNA Ends Than For dsDNA. May Facilitate Recombinational Repair By Pre- Synaptic And/Or Post-Synaptic DNA Degradation. [C]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.- [C]

Molecular weight: Translated: 21350; Mature: 21350

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRRRCAQAWARAICSSSGVVILDTETTGIRSQDQVIELAVLDTHGNVLLETLVKPSCPI
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCC
DPAALRVHGLSEAHLAHAPEWPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLS
CHHHHEECCCCHHHHCCCCCCHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHCCC
LPDLSWDCAMRRFAEYAGPPPTESWRNYHRLSEALQRLGIPHPGAHRAAADAEACRRLVR
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
AMAAGQPLRF
HHHCCCCCCC
>Mature Secondary Structure
MDRRRCAQAWARAICSSSGVVILDTETTGIRSQDQVIELAVLDTHGNVLLETLVKPSCPI
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCC
DPAALRVHGLSEAHLAHAPEWPVVYRELRVIFDRARLIVTYNAPFDRRLIEQTCRCYGLS
CHHHHEECCCCHHHHCCCCCCHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHCCC
LPDLSWDCAMRRFAEYAGPPPTESWRNYHRLSEALQRLGIPHPGAHRAAADAEACRRLVR
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
AMAAGQPLRF
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA