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The map label for this gene is yxkH [H]

Identifier: 221632390

GI number: 221632390

Start: 363159

End: 364061

Strand: Reverse

Name: yxkH [H]

Synonym: trd_0362

Alternate gene names: 221632390

Gene position: 364061-363159 (Counterclockwise)

Preceding gene: 221632394

Following gene: 221632387

Centisome position: 18.18

GC content: 59.03

Gene sequence:

>903_bases
ATGACGAGGGATCTCCCCAGTGAGCCGAGCGACGAGCGGCCTCCGTACTCGATCACCGGTTCCTTGCATCTGGTTGGCAA
TTTAAGAGGAATCGTAGGTAACCCACCCGAGTCTCTCTTTACCGATTCCGCGCACCACTCTCTTCACTTCTTCCAAGATT
CGACCAGACCGACTCGAGACTCGACGCCGGTTGCAGACACATCACAACCGAAACCCTATCGTAAGCCTGTTCCGATACTT
ATGTATCATTACATTCGTCCGCGCCCGGGCCCCGATGACCCGATCGGTCGGGCCCTCTCGGTCGAACCAGCCGAGTTCGC
AGCACAGATCCACTGGCTTTCCACCCATGGCTACACGCCGATAACGCTTTCCGAACTCGAAGCGATCCGACGGGGTGACC
AACCTGCTCCAGCCAAGCCGATCGTTCTCACGTTCGACGACGGCTACCGTGACTTCTACGAGCATGCATGGCCGATCCTG
CGCCAGTACAACTTTCATGCCACGATCTTCGTGATCACCGGATTGCTCGACTCGCCGCGCTATCTTACTTGGGAGATGGT
TCGTGAACTCGATCGCTCAGGGGCGATCGAAATCGGCGCTCATACGGTCCATCACGTCGATTTGACCCAGGTGTCCGATG
CGCAACTGCGAGCAGAACTCACCGAGTGCGCGACGGCGCTTCGCGAGGCACTCGGTCACCCGGTTCTCTCCTTTGCTTAT
CCCGCTGGCAAGATCGATCAGCGCGTGAAAGCAGCGACTGCTGCGGCAGGCTACCGCATGGCGGTCACCACTCAGCCAGG
CCGAGCCGGTGCGGACGATGACCCGCTCGCTCTTCCTCGCCTCCGCGTTTCAGGAGAGATGACACTCGAGCAATTCGCAG
CACTGCTGACTGTGTCCAGCTGA

Upstream 100 bases:

>100_bases
ACTGCTCGCAAAACCAGAGACCTTTCTGCATCCTCGCGTAGCCGCGCCTCCCGAACAGCCGCCACAAGCTCTCCTCGTCG
TTTCCGCCCCGCAGCGGTTC

Downstream 100 bases:

>100_bases
TCACTCAGCTCGGACGACCACGGGGCTCCAAGATCCTGACCTCCGCGACATCACCGACGAGCGCAGCCAAACGTCGAGCG
TCCTCCACCGACCCGACGAC

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTRDLPSEPSDERPPYSITGSLHLVGNLRGIVGNPPESLFTDSAHHSLHFFQDSTRPTRDSTPVADTSQPKPYRKPVPIL
MYHYIRPRPGPDDPIGRALSVEPAEFAAQIHWLSTHGYTPITLSELEAIRRGDQPAPAKPIVLTFDDGYRDFYEHAWPIL
RQYNFHATIFVITGLLDSPRYLTWEMVRELDRSGAIEIGAHTVHHVDLTQVSDAQLRAELTECATALREALGHPVLSFAY
PAGKIDQRVKAATAAAGYRMAVTTQPGRAGADDDPLALPRLRVSGEMTLEQFAALLTVSS

Sequences:

>Translated_300_residues
MTRDLPSEPSDERPPYSITGSLHLVGNLRGIVGNPPESLFTDSAHHSLHFFQDSTRPTRDSTPVADTSQPKPYRKPVPIL
MYHYIRPRPGPDDPIGRALSVEPAEFAAQIHWLSTHGYTPITLSELEAIRRGDQPAPAKPIVLTFDDGYRDFYEHAWPIL
RQYNFHATIFVITGLLDSPRYLTWEMVRELDRSGAIEIGAHTVHHVDLTQVSDAQLRAELTECATALREALGHPVLSFAY
PAGKIDQRVKAATAAAGYRMAVTTQPGRAGADDDPLALPRLRVSGEMTLEQFAALLTVSS
>Mature_299_residues
TRDLPSEPSDERPPYSITGSLHLVGNLRGIVGNPPESLFTDSAHHSLHFFQDSTRPTRDSTPVADTSQPKPYRKPVPILM
YHYIRPRPGPDDPIGRALSVEPAEFAAQIHWLSTHGYTPITLSELEAIRRGDQPAPAKPIVLTFDDGYRDFYEHAWPILR
QYNFHATIFVITGLLDSPRYLTWEMVRELDRSGAIEIGAHTVHHVDLTQVSDAQLRAELTECATALREALGHPVLSFAYP
AGKIDQRVKAATAAAGYRMAVTTQPGRAGADDDPLALPRLRVSGEMTLEQFAALLTVSS

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=207, Percent_Identity=29.4685990338164, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1787260, Length=246, Percent_Identity=26.4227642276423, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33192; Mature: 33061

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRDLPSEPSDERPPYSITGSLHLVGNLRGIVGNPPESLFTDSAHHSLHFFQDSTRPTRD
CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCC
STPVADTSQPKPYRKPVPILMYHYIRPRPGPDDPIGRALSVEPAEFAAQIHWLSTHGYTP
CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCHHHHHEEEEEEECCCCCC
ITLSELEAIRRGDQPAPAKPIVLTFDDGYRDFYEHAWPILRQYNFHATIFVITGLLDSPR
EEHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
YLTWEMVRELDRSGAIEIGAHTVHHVDLTQVSDAQLRAELTECATALREALGHPVLSFAY
EEHHHHHHHHHHCCCEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCC
PAGKIDQRVKAATAAAGYRMAVTTQPGRAGADDDPLALPRLRVSGEMTLEQFAALLTVSS
CCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TRDLPSEPSDERPPYSITGSLHLVGNLRGIVGNPPESLFTDSAHHSLHFFQDSTRPTRD
CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCC
STPVADTSQPKPYRKPVPILMYHYIRPRPGPDDPIGRALSVEPAEFAAQIHWLSTHGYTP
CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCHHHHHEEEEEEECCCCCC
ITLSELEAIRRGDQPAPAKPIVLTFDDGYRDFYEHAWPILRQYNFHATIFVITGLLDSPR
EEHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC
YLTWEMVRELDRSGAIEIGAHTVHHVDLTQVSDAQLRAELTECATALREALGHPVLSFAY
EEHHHHHHHHHHCCCEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCC
PAGKIDQRVKAATAAAGYRMAVTTQPGRAGADDDPLALPRLRVSGEMTLEQFAALLTVSS
CCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]