| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632271
Identifier: 221632271
GI number: 221632271
Start: 247703
End: 248512
Strand: Reverse
Name: 221632271
Synonym: trd_0237
Alternate gene names: NA
Gene position: 248512-247703 (Counterclockwise)
Preceding gene: 221632273
Following gene: 221632270
Centisome position: 12.41
GC content: 64.07
Gene sequence:
>810_bases ATGGGCGAGACGATCGACGCCTACGAGATCATCGCCGACTATTACGACCTCGAGTTCGCGCGCTTCAGCGACGACATCGA GGTCTATCTGGCCTTCGCGCAGCGCACCGGCGATCCGATCCTCGAGATCGGCTGTGGAACCGGTCGGCTACTCGCGCCGC TGGCCCGGTCTGGATACACCGTTCACGGCGTCGATCGTTCCCCCGCTATGCTGGCCCGCGCTCGCGAACGTCTCCGTGCC GAGGGACTCGAGCATGTCCAGCTGTTCCAGGCCGACGCGGTCGATCTCCGGCCACTGGCCGACGGTTTCTACCGGCTCGC CATCATCGCACTGAACGGGTTCCTCCATCTCCTCGATCGGACTGCCCAGCAACGAGCGCTGGCCGAACTGCATCGTGTCA TGACCACAGGCGGGCTCCTGCTCCTCGATCTTCTCCACCCCACCCCGGCGCAGCTCCAGGCCTTGGAGCAACCGCTCAGC TGGGACGGGAACTGGCGCTTACCGGACGGCAGTCGCCTCGACCGCTTCGCCAGTCGCAGCGTGCATCCGTCGGAGCAGAC GATCACCACGACACTCTTTTACGACCGGACCGATGCGCACTCCGGCCAGGTGACACGCCGGGTCGTCAGCTACAAACTTC GTTTCGTTCATCGCTTCGAGTTGGAACTCCTGCTCGAACAGGCTGGGTTCGCTGTCGAAGCCATCTATGGCTCGTACGAT CTCGATCCGCTTACCGACGAGAGCCCGCAGATGTTCGTCGTGGCGCAGCGCCAGCTTTCCCCGGCTATACTCGCTCCGCG TCGAGCGTGA
Upstream 100 bases:
>100_bases ATGCCTCCAGGCAACGAGCGTTCTGCTGGGTTGCCACCGATCGATCCAGCCAGCAGCCGATCCGCGCACTCGGTGGCCTC GCTGAGTACACTGGATGGGG
Downstream 100 bases:
>100_bases GATCGTTGCGGAGGCACGGCTGTGATCCACGGTGTCGAAATCAAGCGGCTGGTTACCCACGTCGACGAGCGCGGTTCGCT GACCGAACTCATTCGCTGCG
Product: putative S-adenosylmethionine (SAM)-dependent methyltransferase
Products: NA
Alternate protein names: SAM-Dependent Methyltransferase; S-Adenosylmethionine-Dependent Methyltransferase; Antibiotic Biosynthesis Protein LmbJ; Methyltransferase Domain Family
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MGETIDAYEIIADYYDLEFARFSDDIEVYLAFAQRTGDPILEIGCGTGRLLAPLARSGYTVHGVDRSPAMLARARERLRA EGLEHVQLFQADAVDLRPLADGFYRLAIIALNGFLHLLDRTAQQRALAELHRVMTTGGLLLLDLLHPTPAQLQALEQPLS WDGNWRLPDGSRLDRFASRSVHPSEQTITTTLFYDRTDAHSGQVTRRVVSYKLRFVHRFELELLLEQAGFAVEAIYGSYD LDPLTDESPQMFVVAQRQLSPAILAPRRA
Sequences:
>Translated_269_residues MGETIDAYEIIADYYDLEFARFSDDIEVYLAFAQRTGDPILEIGCGTGRLLAPLARSGYTVHGVDRSPAMLARARERLRA EGLEHVQLFQADAVDLRPLADGFYRLAIIALNGFLHLLDRTAQQRALAELHRVMTTGGLLLLDLLHPTPAQLQALEQPLS WDGNWRLPDGSRLDRFASRSVHPSEQTITTTLFYDRTDAHSGQVTRRVVSYKLRFVHRFELELLLEQAGFAVEAIYGSYD LDPLTDESPQMFVVAQRQLSPAILAPRRA >Mature_268_residues GETIDAYEIIADYYDLEFARFSDDIEVYLAFAQRTGDPILEIGCGTGRLLAPLARSGYTVHGVDRSPAMLARARERLRAE GLEHVQLFQADAVDLRPLADGFYRLAIIALNGFLHLLDRTAQQRALAELHRVMTTGGLLLLDLLHPTPAQLQALEQPLSW DGNWRLPDGSRLDRFASRSVHPSEQTITTTLFYDRTDAHSGQVTRRVVSYKLRFVHRFELELLLEQAGFAVEAIYGSYDL DPLTDESPQMFVVAQRQLSPAILAPRRA
Specific function: Unknown
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30265; Mature: 30134
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGETIDAYEIIADYYDLEFARFSDDIEVYLAFAQRTGDPILEIGCGTGRLLAPLARSGYT CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEEHHHCCCCEEEEECCCCHHHHHHHHCCCE VHGVDRSPAMLARARERLRAEGLEHVQLFQADAVDLRPLADGFYRLAIIALNGFLHLLDR EEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TAQQRALAELHRVMTTGGLLLLDLLHPTPAQLQALEQPLSWDGNWRLPDGSRLDRFASRS HHHHHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHHCCCCCCCCEECCCCCHHHHHHHCC VHPSEQTITTTLFYDRTDAHSGQVTRRVVSYKLRFVHRFELELLLEQAGFAVEAIYGSYD CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC LDPLTDESPQMFVVAQRQLSPAILAPRRA CCCCCCCCCCEEEEECCCCCCHHCCCCCC >Mature Secondary Structure GETIDAYEIIADYYDLEFARFSDDIEVYLAFAQRTGDPILEIGCGTGRLLAPLARSGYT CCCHHHHHHHHHHHHHHHHHCCCCHHHHHEEHHHCCCCEEEEECCCCHHHHHHHHCCCE VHGVDRSPAMLARARERLRAEGLEHVQLFQADAVDLRPLADGFYRLAIIALNGFLHLLDR EEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TAQQRALAELHRVMTTGGLLLLDLLHPTPAQLQALEQPLSWDGNWRLPDGSRLDRFASRS HHHHHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHHCCCCCCCCEECCCCCHHHHHHHCC VHPSEQTITTTLFYDRTDAHSGQVTRRVVSYKLRFVHRFELELLLEQAGFAVEAIYGSYD CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCC LDPLTDESPQMFVVAQRQLSPAILAPRRA CCCCCCCCCCEEEEECCCCCCHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA