Click here to switch to the map view.

The map label for this gene is ybjZ [C]

Identifier: 221632255

GI number: 221632255

Start: 231688

End: 234039

Strand: Reverse

Name: ybjZ [C]

Synonym: trd_0221

Alternate gene names: 221632255

Gene position: 234039-231688 (Counterclockwise)

Preceding gene: 221632258

Following gene: 221632254

Centisome position: 11.68

GC content: 66.88

Gene sequence:

>2352_bases
GTGCCGATCGCGCTGCTCGCTGCCTTCGCGATGCGCTCCCTCCGTTTGCGCCGTATCCGCGCAACGCTCGCTGGCGCGAG
CATCGCGCTCGCCGTCTTCGCCGTCGTCGCCATTCGGAGTGCTGGTCTGGCATTGATCGAGGCGCAGCAGCGGACCTATG
CGGCGACCGGACAGCCGGATATCGTCGCGAGCGTTCATGGCCTGACACCCGGCCTCGTCGCAGCGCTGGCGAGACGCGAC
GGTGTTCTCGAGGCGGAGTCGCGCCTCATTCAGTCGAGTCGCCTCACCGTGGATGGGCGCTGGCGGGCTGTCCGACTCGT
CGGCATCGAGCGGTTCGACCAACTGGCACTCGACCGTCCCGAGTTGGTCGCCGGACGGTGGCCAGAGCGGGGCGAGGTAG
TCCTCGACGTCACCGCTCGACACCTGCTCGGTATCGAAATCGGGACGCTCGTCGCTTTCCAAGCCAACCCGGGTGATCCG
ATTCACTATGCGCGCGTGAGCGGCTTCGCCTGGGTTCCCGCTCGCCCCAGTGCGACGCTCCTCGACCAGTTCACAGCCTA
TGTGCCGCTGCGCACGCTACGCCAGTGGACTGGCAGCGAGGCAGCGAACACGTTACTGGTCCGTGTCGACAATCCGGCGC
TCGCCGGTCGAGTAGCGAGCGAACTCCAGCGGTTCCTCGCAGCACGCCAGATCCCGAGCAGCGGTTGGACGGTCCGCGAC
CCCGATTCGTTCCTCGGTGCCCGCGAACTCGCGACGTTGCTTCTCCTTCTGCGCGCCTTCGCGATACTCGGTACGTTGAC
AGCACTCTTCATCGTCGCCAACACGACCATCGGGCTGGTCACGGAGGAACGCCCCCAACTCGGCACCTTGCGCGCCCTCG
GCACCACGCGGAGCCAACTCGTCAGCGCCTACCTGGCACCACACATCGTCATCGGCACGGCTGGAAGCGTGGTCGGCCTC
CTCGCCGGGACAGCCGGTGGGTACGTCCTGACCGCGTACCTGGCCGGCCTTGCCGGGCTAGTACTCCCACCGCTCCGAGT
CGCACCCAGCAGCGTGCTCCTCGCGCTCGGCTGTGGCCTCGGGATCGCGGTGGCCGGTGCACTCGGCCCGATCCTCCACG
CCACGCGAACGCCAGCCGCTCAGCTCCTCCGCGGCGACACCCGGGCACCGGGCGATCCACCGCGCTGGCTGACCCGCTCG
ACAGGCTGGTTGGCCCAGCGCTCTCCCATTCTCGGCATGAGTACCCGCGATCCCTTCCGCCGCCCACTCCGCGCGGCACT
CACTGTCCTGGTGACGGCTGTGGCACTCGCTGCGCTCCTCGCCAGCCAGATCGTCGACCACTCGTTGCGTGCCGGTATCG
CTGCGCTCTACGATCGCTATCGGGCAGATGCCTGGCTCTTGACCAACCCACCGGTTCCACCCACCTATGCACACCGGTTG
GCGAACAGCCCTCCTGTCCGTGCCGCGGAACCCTGGGTCCTGACATCCGGCGCGATCGGATCGGTCCGCACCGACGTCTG
GGGGCTTCCAGCGAAGACGAGCGTCTACCAGCCGGTGATGCTGGCTGGTCAGTGGCTCGACGACGCACCCGCTGCCTATC
CCCCCCGCGCGGTCATCACTGGCAATCTGGCTCGGCGCCTCGACGCCCAAGTGGGTGACGTTCTCCCCCTCGACCTCGGC
CGACAGCGTCTCCCGATTCAGGTCAGCGGAATCGTCGATGACGAAAGCACCTATCTGGGGGCAACGGCCATCGGCAAGGT
TTTCCTGGATCACCAGATCCTCACTCGGCTCCTCGGACGTGACGATCGAGCAGCGCTCTACGCCCTTCGGTTCTGGGACA
CCGTTCGACCGAGCGACTCTTTGACGACCGTAGAGCAGTACGCTCGCACGCTGCGCCCGCTCACGCTTCTCATGGCGGAA
GATCGCGCCGCGACCGAGCGTGTGCTGGCCGTTTTGACCATCCTGGCCCGCATCGTCGTCCTCGTCATCACTATCGCGAC
CGTTTTCGGAATTACCAACGCGCTGCTCCTCGATCTCACGGAGCGCCGCCGCGAGTTTGGCATCCTGCGGACGCTCGGGA
CGGAGCGCGCGACGCTCGTGCTGCTCCTGGCTGGCCAAACGCTGGTTATCGTCGTTTTCGGCGCACTACTGGCTGTTCCG
GTTGGCTTTCTGCTCGCCGTGAATATCCTCGCGCTGGTGAGCCGCCAGCTCTTCGCCATCCCGCTCGCGCTTCCCTCGAC
CGTGGTGCTCGTTCTCATCGCAGCGGTCGCACTCACGACCGCACTCGCCGTCCTGATCCCGGCTCTGCTCGCTGTCCGAC
TCCGCCCTGTCGAGGTCCTCCGCTATGAGTGA

Upstream 100 bases:

>100_bases
AAGGCGATCGTGTCGACGAGCAGGGCCACGACCGGGTGAGCGAGCGTCGGCCGGTTCTCCACATCGCGTACAATCCGCCA
GCGGAGAGGTTGGCTCGGAC

Downstream 100 bases:

>100_bases
GCGACGCCGTCGCTCGATACCGATCATCCTGGCACTCGTCACGGTCGCTGTCGTTGCCGGACTGTGGCTCTGGCTCAGAC
GGCCGAGCGAGACGGTCTGG

Product: putative permease domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 783; Mature: 782

Protein sequence:

>783_residues
MPIALLAAFAMRSLRLRRIRATLAGASIALAVFAVVAIRSAGLALIEAQQRTYAATGQPDIVASVHGLTPGLVAALARRD
GVLEAESRLIQSSRLTVDGRWRAVRLVGIERFDQLALDRPELVAGRWPERGEVVLDVTARHLLGIEIGTLVAFQANPGDP
IHYARVSGFAWVPARPSATLLDQFTAYVPLRTLRQWTGSEAANTLLVRVDNPALAGRVASELQRFLAARQIPSSGWTVRD
PDSFLGARELATLLLLLRAFAILGTLTALFIVANTTIGLVTEERPQLGTLRALGTTRSQLVSAYLAPHIVIGTAGSVVGL
LAGTAGGYVLTAYLAGLAGLVLPPLRVAPSSVLLALGCGLGIAVAGALGPILHATRTPAAQLLRGDTRAPGDPPRWLTRS
TGWLAQRSPILGMSTRDPFRRPLRAALTVLVTAVALAALLASQIVDHSLRAGIAALYDRYRADAWLLTNPPVPPTYAHRL
ANSPPVRAAEPWVLTSGAIGSVRTDVWGLPAKTSVYQPVMLAGQWLDDAPAAYPPRAVITGNLARRLDAQVGDVLPLDLG
RQRLPIQVSGIVDDESTYLGATAIGKVFLDHQILTRLLGRDDRAALYALRFWDTVRPSDSLTTVEQYARTLRPLTLLMAE
DRAATERVLAVLTILARIVVLVITIATVFGITNALLLDLTERRREFGILRTLGTERATLVLLLAGQTLVIVVFGALLAVP
VGFLLAVNILALVSRQLFAIPLALPSTVVLVLIAAVALTTALAVLIPALLAVRLRPVEVLRYE

Sequences:

>Translated_783_residues
MPIALLAAFAMRSLRLRRIRATLAGASIALAVFAVVAIRSAGLALIEAQQRTYAATGQPDIVASVHGLTPGLVAALARRD
GVLEAESRLIQSSRLTVDGRWRAVRLVGIERFDQLALDRPELVAGRWPERGEVVLDVTARHLLGIEIGTLVAFQANPGDP
IHYARVSGFAWVPARPSATLLDQFTAYVPLRTLRQWTGSEAANTLLVRVDNPALAGRVASELQRFLAARQIPSSGWTVRD
PDSFLGARELATLLLLLRAFAILGTLTALFIVANTTIGLVTEERPQLGTLRALGTTRSQLVSAYLAPHIVIGTAGSVVGL
LAGTAGGYVLTAYLAGLAGLVLPPLRVAPSSVLLALGCGLGIAVAGALGPILHATRTPAAQLLRGDTRAPGDPPRWLTRS
TGWLAQRSPILGMSTRDPFRRPLRAALTVLVTAVALAALLASQIVDHSLRAGIAALYDRYRADAWLLTNPPVPPTYAHRL
ANSPPVRAAEPWVLTSGAIGSVRTDVWGLPAKTSVYQPVMLAGQWLDDAPAAYPPRAVITGNLARRLDAQVGDVLPLDLG
RQRLPIQVSGIVDDESTYLGATAIGKVFLDHQILTRLLGRDDRAALYALRFWDTVRPSDSLTTVEQYARTLRPLTLLMAE
DRAATERVLAVLTILARIVVLVITIATVFGITNALLLDLTERRREFGILRTLGTERATLVLLLAGQTLVIVVFGALLAVP
VGFLLAVNILALVSRQLFAIPLALPSTVVLVLIAAVALTTALAVLIPALLAVRLRPVEVLRYE
>Mature_782_residues
PIALLAAFAMRSLRLRRIRATLAGASIALAVFAVVAIRSAGLALIEAQQRTYAATGQPDIVASVHGLTPGLVAALARRDG
VLEAESRLIQSSRLTVDGRWRAVRLVGIERFDQLALDRPELVAGRWPERGEVVLDVTARHLLGIEIGTLVAFQANPGDPI
HYARVSGFAWVPARPSATLLDQFTAYVPLRTLRQWTGSEAANTLLVRVDNPALAGRVASELQRFLAARQIPSSGWTVRDP
DSFLGARELATLLLLLRAFAILGTLTALFIVANTTIGLVTEERPQLGTLRALGTTRSQLVSAYLAPHIVIGTAGSVVGLL
AGTAGGYVLTAYLAGLAGLVLPPLRVAPSSVLLALGCGLGIAVAGALGPILHATRTPAAQLLRGDTRAPGDPPRWLTRST
GWLAQRSPILGMSTRDPFRRPLRAALTVLVTAVALAALLASQIVDHSLRAGIAALYDRYRADAWLLTNPPVPPTYAHRLA
NSPPVRAAEPWVLTSGAIGSVRTDVWGLPAKTSVYQPVMLAGQWLDDAPAAYPPRAVITGNLARRLDAQVGDVLPLDLGR
QRLPIQVSGIVDDESTYLGATAIGKVFLDHQILTRLLGRDDRAALYALRFWDTVRPSDSLTTVEQYARTLRPLTLLMAED
RAATERVLAVLTILARIVVLVITIATVFGITNALLLDLTERRREFGILRTLGTERATLVLLLAGQTLVIVVFGALLAVPV
GFLLAVNILALVSRQLFAIPLALPSTVVLVLIAAVALTTALAVLIPALLAVRLRPVEVLRYE

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 83621; Mature: 83490

Theoretical pI: Translated: 11.21; Mature: 11.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIALLAAFAMRSLRLRRIRATLAGASIALAVFAVVAIRSAGLALIEAQQRTYAATGQPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHEECCCCCC
IVASVHGLTPGLVAALARRDGVLEAESRLIQSSRLTVDGRWRAVRLVGIERFDQLALDRP
CEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCEECCCEEEEEEECHHHHHHHHCCCC
ELVAGRWPERGEVVLDVTARHLLGIEIGTLVAFQANPGDPIHYARVSGFAWVPARPSATL
HHHCCCCCCCCCEEEEEHHHHHHCEEEHEEEEEECCCCCCEEEEEECCEEEECCCCCHHH
LDQFTAYVPLRTLRQWTGSEAANTLLVRVDNPALAGRVASELQRFLAARQIPSSGWTVRD
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDSFLGARELATLLLLLRAFAILGTLTALFIVANTTIGLVTEERPQLGTLRALGTTRSQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCCHHHH
VSAYLAPHIVIGTAGSVVGLLAGTAGGYVLTAYLAGLAGLVLPPLRVAPSSVLLALGCGL
HHHHHCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCH
GIAVAGALGPILHATRTPAAQLLRGDTRAPGDPPRWLTRSTGWLAQRSPILGMSTRDPFR
HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHH
RPLRAALTVLVTAVALAALLASQIVDHSLRAGIAALYDRYRADAWLLTNPPVPPTYAHRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHC
ANSPPVRAAEPWVLTSGAIGSVRTDVWGLPAKTSVYQPVMLAGQWLDDAPAAYPPRAVIT
CCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEE
GNLARRLDAQVGDVLPLDLGRQRLPIQVSGIVDDESTYLGATAIGKVFLDHQILTRLLGR
CHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCC
DDRAALYALRFWDTVRPSDSLTTVEQYARTLRPLTLLMAEDRAATERVLAVLTILARIVV
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LVITIATVFGITNALLLDLTERRREFGILRTLGTERATLVLLLAGQTLVIVVFGALLAVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
VGFLLAVNILALVSRQLFAIPLALPSTVVLVLIAAVALTTALAVLIPALLAVRLRPVEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RYE
CCC
>Mature Secondary Structure 
PIALLAAFAMRSLRLRRIRATLAGASIALAVFAVVAIRSAGLALIEAQQRTYAATGQPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHEECCCCCC
IVASVHGLTPGLVAALARRDGVLEAESRLIQSSRLTVDGRWRAVRLVGIERFDQLALDRP
CEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCEECCCEEEEEEECHHHHHHHHCCCC
ELVAGRWPERGEVVLDVTARHLLGIEIGTLVAFQANPGDPIHYARVSGFAWVPARPSATL
HHHCCCCCCCCCEEEEEHHHHHHCEEEHEEEEEECCCCCCEEEEEECCEEEECCCCCHHH
LDQFTAYVPLRTLRQWTGSEAANTLLVRVDNPALAGRVASELQRFLAARQIPSSGWTVRD
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDSFLGARELATLLLLLRAFAILGTLTALFIVANTTIGLVTEERPQLGTLRALGTTRSQL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHCCCHHHH
VSAYLAPHIVIGTAGSVVGLLAGTAGGYVLTAYLAGLAGLVLPPLRVAPSSVLLALGCGL
HHHHHCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCH
GIAVAGALGPILHATRTPAAQLLRGDTRAPGDPPRWLTRSTGWLAQRSPILGMSTRDPFR
HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHH
RPLRAALTVLVTAVALAALLASQIVDHSLRAGIAALYDRYRADAWLLTNPPVPPTYAHRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHC
ANSPPVRAAEPWVLTSGAIGSVRTDVWGLPAKTSVYQPVMLAGQWLDDAPAAYPPRAVIT
CCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEE
GNLARRLDAQVGDVLPLDLGRQRLPIQVSGIVDDESTYLGATAIGKVFLDHQILTRLLGR
CHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCC
DDRAALYALRFWDTVRPSDSLTTVEQYARTLRPLTLLMAEDRAATERVLAVLTILARIVV
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LVITIATVFGITNALLLDLTERRREFGILRTLGTERATLVLLLAGQTLVIVVFGALLAVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
VGFLLAVNILALVSRQLFAIPLALPSTVVLVLIAAVALTTALAVLIPALLAVRLRPVEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RYE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA