| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632236
Identifier: 221632236
GI number: 221632236
Start: 207048
End: 208736
Strand: Reverse
Name: 221632236
Synonym: trd_0202
Alternate gene names: NA
Gene position: 208736-207048 (Counterclockwise)
Preceding gene: 221632237
Following gene: 221632235
Centisome position: 10.42
GC content: 64.48
Gene sequence:
>1689_bases ATGCCGGAACAGACGATCACCGATAATCTCGAGGATCTGCTGGCAGTCTTGCCACCCGATATCGTCGAGGCACTCCGGGA GTACAACAGCCCAGAGGACCGGGCCAAGCTGCTCGAAATCGTTCTCGACCTGGGGCGGCGCCCCGAGGCACGGTTCGAGG ACCGCGAGGTGTATCTGGCGGATCGCGAGATCACGCGCGAGGACATCGCCTACGTCGCGTCGCGGATCGGTCGCTTCGGG GATGATAACCGAGCAGGTATCGAGCGCACGCTGCACCGCATTTCCGCGATTCGCTCGCGATCCGGTGAGATCGTCGGCCT GACGTGCCGCATCGGTCGAGCAGTTTATGGAACGGTCGCCATCATCCGTGACTTGATCGAGTCGGGCGAAAGCATCTTGC TCTTGGGTCGGCCCGGTGTCGGCAAGACGACCATGTTGCGCGAAACAGCGCGGGTGCTGGCTGACGACCTGCGCAAGCGG GTGATCGTCGTGGATACGAGCAACGAGATCGCGGGTGACGGCGATATCCCTCACCCAGCGATCGGTCGCGCTCGCCGGAT GCAGGTACCGACGCCCAGCCTTCAGCACGCGGTGATGATCGAAGCGGTCGAGAACCACATGCCGGAGGTCATCGTCATCG ACGAGATCGGTACCGAACTCGAGGCTGCCGCCGCACGCACGATCGCCGAGCGTGGCGTGCAGCTCATCGGAACCGCACAC GGGAACACGCTGGAAAACATCATGATGAATCCGACCCTCTCGGATCTCATCGGCGGAATCCAGTCGGTCACGTTGAGCGA CGAGGAAGCTCGCCGGCGGGGCACCCAGAAGTCGATCCTGGAACGCAAGGCACCACCGACCTTCGGCGTTTTGGTCGAGA TTCAGTCGCGTAACCGCGTCGCCGTGCACCGCGACGTCGCGGCCGCGGTCGATGCCATCCTGCGCGGCCAGCCGCTCCGC GTCGAGATCCGCGAGAGAAACCCGGACGGAACGGTCTCCATCTGGTACGAGGAGCTGCACGGACAAGATCAACGTGCCGA GCGTTCCATGCTCCCCTCCGGACCGCGACGAACCTACCAGCGGATTCCCGGTACGCCGGCCCCGACTCGACCAGCGACTC CTTCCGGGACGATCGTAGCCGTCGCTCCACCGAGCGAGCCGATCAGGCGGACTATGCGACTCTTTCCCTTCGGCGTGAGT CGGAACCGGCTGGAGGACGTGATTCGCCAATTGATGCTTCCGGTCGAGCTCGTCCGCTCGCCCCGTGAGGCAGATGCTGT CGTGACGCTGAAGAACTACTTCCGCAAGCGACCGCAGGTACTCCGCGAGGCCGAACAACGTGGCATCCCGGTATACGTCC TGCGGAGCAACACGGCGCAGCAGATGGCCAACCTGTTCCGCTCGCTGTTCCCCGAGCGATTCGCGGGCGAGCAGGAACCG GAATCAGCTGCTGACGACGGCGACGAGAACGCAGCGCACGATCGCATCCTGGCTGCGATGGAGGAAGCAGAAGCTGCCGC GCACCAGGTGCTCCAGGGGACGCGCAGCCGGATCGAGTTGCGTCCGCAGGAAGCCTGGATTCGACGCCTCCAGCATCAGC TCGCCGAGCGGTACAACCTGGCATCCCGCAGCCGCGGGCGAGAGCCCTTCCGCCGGGTCGAAATCTACCGCGAGGACGAG AGCTGGTGA
Upstream 100 bases:
>100_bases CGACCGAAGGTCGCCGTGCTGGAACGCGCGACACGATCATGAAACGAAGAGGAGGACGACGACGCGCACCGTGACGAAGC CTGTTACCATTCTTCCGGCA
Downstream 100 bases:
>100_bases GTTGGTTCATCACCTTCGAGGGACCGGAAGGAGCAGGCAAGACGACACAATGCGCTCTTTTGGCTGCCCGGCTCCGCGAA GCTGGTTATTCCCTTCTCGT
Product: ATPase-like protein
Products: NA
Alternate protein names: AAA ATPase; R3H Domain Protein; ATPase; R3H Domain-Containing Protein; AAA ATPase Superfamily Protein; ATPase-Like Protein; AAA ATPase Central Domain Protein; Stage III Sporulation Protein IIIAA; Sporulation Stage III Protein AA; ATPase Like Protein
Number of amino acids: Translated: 562; Mature: 561
Protein sequence:
>562_residues MPEQTITDNLEDLLAVLPPDIVEALREYNSPEDRAKLLEIVLDLGRRPEARFEDREVYLADREITREDIAYVASRIGRFG DDNRAGIERTLHRISAIRSRSGEIVGLTCRIGRAVYGTVAIIRDLIESGESILLLGRPGVGKTTMLRETARVLADDLRKR VIVVDTSNEIAGDGDIPHPAIGRARRMQVPTPSLQHAVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLIGTAH GNTLENIMMNPTLSDLIGGIQSVTLSDEEARRRGTQKSILERKAPPTFGVLVEIQSRNRVAVHRDVAAAVDAILRGQPLR VEIRERNPDGTVSIWYEELHGQDQRAERSMLPSGPRRTYQRIPGTPAPTRPATPSGTIVAVAPPSEPIRRTMRLFPFGVS RNRLEDVIRQLMLPVELVRSPREADAVVTLKNYFRKRPQVLREAEQRGIPVYVLRSNTAQQMANLFRSLFPERFAGEQEP ESAADDGDENAAHDRILAAMEEAEAAAHQVLQGTRSRIELRPQEAWIRRLQHQLAERYNLASRSRGREPFRRVEIYREDE SW
Sequences:
>Translated_562_residues MPEQTITDNLEDLLAVLPPDIVEALREYNSPEDRAKLLEIVLDLGRRPEARFEDREVYLADREITREDIAYVASRIGRFG DDNRAGIERTLHRISAIRSRSGEIVGLTCRIGRAVYGTVAIIRDLIESGESILLLGRPGVGKTTMLRETARVLADDLRKR VIVVDTSNEIAGDGDIPHPAIGRARRMQVPTPSLQHAVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLIGTAH GNTLENIMMNPTLSDLIGGIQSVTLSDEEARRRGTQKSILERKAPPTFGVLVEIQSRNRVAVHRDVAAAVDAILRGQPLR VEIRERNPDGTVSIWYEELHGQDQRAERSMLPSGPRRTYQRIPGTPAPTRPATPSGTIVAVAPPSEPIRRTMRLFPFGVS RNRLEDVIRQLMLPVELVRSPREADAVVTLKNYFRKRPQVLREAEQRGIPVYVLRSNTAQQMANLFRSLFPERFAGEQEP ESAADDGDENAAHDRILAAMEEAEAAAHQVLQGTRSRIELRPQEAWIRRLQHQLAERYNLASRSRGREPFRRVEIYREDE SW >Mature_561_residues PEQTITDNLEDLLAVLPPDIVEALREYNSPEDRAKLLEIVLDLGRRPEARFEDREVYLADREITREDIAYVASRIGRFGD DNRAGIERTLHRISAIRSRSGEIVGLTCRIGRAVYGTVAIIRDLIESGESILLLGRPGVGKTTMLRETARVLADDLRKRV IVVDTSNEIAGDGDIPHPAIGRARRMQVPTPSLQHAVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLIGTAHG NTLENIMMNPTLSDLIGGIQSVTLSDEEARRRGTQKSILERKAPPTFGVLVEIQSRNRVAVHRDVAAAVDAILRGQPLRV EIRERNPDGTVSIWYEELHGQDQRAERSMLPSGPRRTYQRIPGTPAPTRPATPSGTIVAVAPPSEPIRRTMRLFPFGVSR NRLEDVIRQLMLPVELVRSPREADAVVTLKNYFRKRPQVLREAEQRGIPVYVLRSNTAQQMANLFRSLFPERFAGEQEPE SAADDGDENAAHDRILAAMEEAEAAAHQVLQGTRSRIELRPQEAWIRRLQHQLAERYNLASRSRGREPFRRVEIYREDES W
Specific function: Unknown
COG id: COG3854
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63152; Mature: 63021
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS51061 R3H
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEQTITDNLEDLLAVLPPDIVEALREYNSPEDRAKLLEIVLDLGRRPEARFEDREVYLA CCCCCHHHCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEE DREITREDIAYVASRIGRFGDDNRAGIERTLHRISAIRSRSGEIVGLTCRIGRAVYGTVA CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHH IIRDLIESGESILLLGRPGVGKTTMLRETARVLADDLRKRVIVVDTSNEIAGDGDIPHPA HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH IGRARRMQVPTPSLQHAVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLIGTAH HCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECC GNTLENIMMNPTLSDLIGGIQSVTLSDEEARRRGTQKSILERKAPPTFGVLVEIQSRNRV CCHHHHHHCCCCHHHHHCCHHEEECCCHHHHHCCHHHHHHHHCCCCCEEEEEEECCCCCE AVHRDVAAAVDAILRGQPLRVEIRERNPDGTVSIWYEELHGQDQRAERSMLPSGPRRTYQ EHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEHHHCCCHHHHHHHCCCCCCHHHHH RIPGTPAPTRPATPSGTIVAVAPPSEPIRRTMRLFPFGVSRNRLEDVIRQLMLPVELVRS HCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC PREADAVVTLKNYFRKRPQVLREAEQRGIPVYVLRSNTAQQMANLFRSLFPERFAGEQEP CCHHHHEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCHHHHCCCCCC ESAADDGDENAAHDRILAAMEEAEAAAHQVLQGTRSRIELRPQEAWIRRLQHQLAERYNL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHH ASRSRGREPFRRVEIYREDESW HHHHCCCCCHHHHHEEECCCCC >Mature Secondary Structure PEQTITDNLEDLLAVLPPDIVEALREYNSPEDRAKLLEIVLDLGRRPEARFEDREVYLA CCCCHHHCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEE DREITREDIAYVASRIGRFGDDNRAGIERTLHRISAIRSRSGEIVGLTCRIGRAVYGTVA CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHH IIRDLIESGESILLLGRPGVGKTTMLRETARVLADDLRKRVIVVDTSNEIAGDGDIPHPA HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH IGRARRMQVPTPSLQHAVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLIGTAH HCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECC GNTLENIMMNPTLSDLIGGIQSVTLSDEEARRRGTQKSILERKAPPTFGVLVEIQSRNRV CCHHHHHHCCCCHHHHHCCHHEEECCCHHHHHCCHHHHHHHHCCCCCEEEEEEECCCCCE AVHRDVAAAVDAILRGQPLRVEIRERNPDGTVSIWYEELHGQDQRAERSMLPSGPRRTYQ EHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEHHHCCCHHHHHHHCCCCCCHHHHH RIPGTPAPTRPATPSGTIVAVAPPSEPIRRTMRLFPFGVSRNRLEDVIRQLMLPVELVRS HCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC PREADAVVTLKNYFRKRPQVLREAEQRGIPVYVLRSNTAQQMANLFRSLFPERFAGEQEP CCHHHHEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCHHHHCCCCCC ESAADDGDENAAHDRILAAMEEAEAAAHQVLQGTRSRIELRPQEAWIRRLQHQLAERYNL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHH ASRSRGREPFRRVEIYREDESW HHHHCCCCCHHHHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA