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The map label for this gene is yfiQ [C]

Identifier: 221632152

GI number: 221632152

Start: 122797

End: 124947

Strand: Reverse

Name: yfiQ [C]

Synonym: trd_0117

Alternate gene names: 221632152

Gene position: 124947-122797 (Counterclockwise)

Preceding gene: 221632153

Following gene: 221632151

Centisome position: 6.24

GC content: 64.99

Gene sequence:

>2151_bases
GTGCAATCGGAGATGCTGGCCCCGCTGTTGCGACCGCGCAGCATCGTCGTCGTCGGCGCGAGCCCGCGGCGGCGCATGGC
CCGGACTGTCCTCTCCAATTTGCGAACCTTCGGCTTTCGCGGTCCAGTGTGGGCACTGCATCCCAGTGGTGAGGCGGTCG
AGGGGTTCCCCTGCTTCCGCACAGTCGAGGACCTCCCCGAAACGCCTGACTGCGCAGTGATCGCCCTCTCACCGGAAAAT
ACCCTGCAGGCGTTTCGCGCACTCGCTGAGCGAGGAGTGCGGGCTGCGGTTCTACTCGGCTCCGGTTTCGCCGAGGCGGG
TCCCTCAGGCTTGGCGATTCAGCAGGAAATCACCGCCATCGCCCGCGACCGCGGCATCGCCGTCTGTGGTCCCAATTGTC
TGGGGTTGGTCACTCCGGACGCACGAGCAACCTTGACCGGCTATCACCTGCCAGGCGACCTGGCGACCGGTCCGGCCGCT
GCGGTCGTGCAGAGCGGTTCCGTCTTTTGGTCCTTGGCCCACAACACGCGGTCACTCCGCTTTCGCTACCTGGTCTCGAG
CGGGAACGAAGCCGTCCTGACTGCGGCCGATTACTTCGCGGCCGCCTTGTCCGACCCCCACGTGCGTCTTCTCGTCGGCT
TCCTCGAAGTCGTGCGCGATGGCGAGCGGTTCCTGGACGTGATCCAGGCCGCTCATGCGCGTTCTGTCCCGATCGTCCTG
CTCAAGGTCGGTCGCTCGGAATTGGCCCGCGCGACGGTTCTGGTGCACACCGGCGCGATCGCTGGCTCGGACGCGATCTT
CCGCGATATCATGCGCCAATACGGCGTGATCCTGGTCGAGACGCTCGACGAGCTGTACGACACGGCTGAATTTCTGCTCG
CTGGGCGCTGGCCACGGAGCTTCCGCGTCGGCGTGGTGACCGATAGTGGAGGAGAGAAAGCGCTCATCGCGGACTGGGGA
GAGCGGATCGGCCTCGAGTTCCCACCCTTGTCACCCAAAACTGCCGAACGACTGCGGACGGTTCTGGCTCCGTACGTCAA
GCTCGAGAATCCGCTGGACGCCTGGGGTTCCGGCAACTTCGACGAAGTCTACCCGGCCACGTTGGCCGCCTTCGCCGAAG
ACCCGAACATCGAGACCATTGTCTTGGGAACCGACATGGTGCGGGAAACCGAGGAAGCGCACCTGTATGCCGAGGCGATG
CTCGCTTTGCGCGAGCGCACCGCGAAGCCACTCGCTGTGGTCACCAATCAGGCAACGGGGCTCGATTGCACGGAAGTGCA
GCGCCTCCGCGCGGCCGGGATTCCCGTTTTGCAAGGAACCGAATACGGGTACCGCGCGATCGCTCATGCAGCGCGCTACA
GCCAGTGGCGAGCCAGCGCACCGGACTCGCTCGCTCCACCGTCCTCCCTCGGGGAGATTCGCCAGGAGATCGAGCGCTGG
CATCAGCGTGCCACGCGGTCAGCACACGATCAACCGGTGACGCTGACCGAGTACGAAGCGAAGCAGATCCTCGCACGTAT
CGGCTTGCCTATCCCGAGCGAACGCTGGGTGACCTGCCTGGAGGAAGCACTCGCGGCAGCCGACGAGATCGGGTTTCCGG
TCGTGCTCAAGGCACAGGGACCGAACTTGCTCCACAAGAGCGACCTCGGAGCGGTCCGGCTCGGTATCAGTGATCGCCAG
GCGCTGATCGAGGCATGGCAGGGGATGGTCGAGACCCTCGCGGCCACACCATCGCTGGAGGTCACCGGCTATCTGGTTCA
ACGACAAATTCCGCACGGGCTGGAGCTTCTCCTCGGATGCCTCCGCGATTCGACGTTCGGCATGGTGGTGAGTGTCGGTC
TCGGCGGTGAGTTCGTGGAGATCTGGCGAGATGTCGTCTATCGCAAGGCCCCGGTCAGTCCAGAGGAGGCGGATCGGATG
CTCAGCGAACTGCGGGGCGCAGCCCTGCTGGCTGGTCATCGACGGCTGGCTCCACGTGACCGCCGTGCGGCGGCCGAGGC
CATCGCTCGTTTCAGCTGGTTCGCCGTGGCAGCGGCTGACCTGATCGAGGTCGCGGAAGTGAATCCGCTCATCGTGCTCG
AGGAAGGACGAGGTGCGTGGGCAGTCGACAGTCTGATCGTTCTGCGTGCTCCGGAAAGGAGGGATGGGTGA

Upstream 100 bases:

>100_bases
TTTGCTACGACAGCCGGTCTCGACGGTCCTGCCCATTGCCCGATTTCGTCCGGGAAAAGATCGAGGCGTTCGAGGGTGCA
TGATGCACGAGCAGAGAACA

Downstream 100 bases:

>100_bases
TGGATGGCGTCCGGGCAGAGGTTCTCGAGTTCGTCGAGGAGACCAAGCGCTACGTCTATGAGGAGCTGATGCCGCTCGAA
GACGAGATCGAGCGGACAGA

Product: putative pimeloyl-CoA synthetase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 716; Mature: 716

Protein sequence:

>716_residues
MQSEMLAPLLRPRSIVVVGASPRRRMARTVLSNLRTFGFRGPVWALHPSGEAVEGFPCFRTVEDLPETPDCAVIALSPEN
TLQAFRALAERGVRAAVLLGSGFAEAGPSGLAIQQEITAIARDRGIAVCGPNCLGLVTPDARATLTGYHLPGDLATGPAA
AVVQSGSVFWSLAHNTRSLRFRYLVSSGNEAVLTAADYFAAALSDPHVRLLVGFLEVVRDGERFLDVIQAAHARSVPIVL
LKVGRSELARATVLVHTGAIAGSDAIFRDIMRQYGVILVETLDELYDTAEFLLAGRWPRSFRVGVVTDSGGEKALIADWG
ERIGLEFPPLSPKTAERLRTVLAPYVKLENPLDAWGSGNFDEVYPATLAAFAEDPNIETIVLGTDMVRETEEAHLYAEAM
LALRERTAKPLAVVTNQATGLDCTEVQRLRAAGIPVLQGTEYGYRAIAHAARYSQWRASAPDSLAPPSSLGEIRQEIERW
HQRATRSAHDQPVTLTEYEAKQILARIGLPIPSERWVTCLEEALAAADEIGFPVVLKAQGPNLLHKSDLGAVRLGISDRQ
ALIEAWQGMVETLAATPSLEVTGYLVQRQIPHGLELLLGCLRDSTFGMVVSVGLGGEFVEIWRDVVYRKAPVSPEEADRM
LSELRGAALLAGHRRLAPRDRRAAAEAIARFSWFAVAAADLIEVAEVNPLIVLEEGRGAWAVDSLIVLRAPERRDG

Sequences:

>Translated_716_residues
MQSEMLAPLLRPRSIVVVGASPRRRMARTVLSNLRTFGFRGPVWALHPSGEAVEGFPCFRTVEDLPETPDCAVIALSPEN
TLQAFRALAERGVRAAVLLGSGFAEAGPSGLAIQQEITAIARDRGIAVCGPNCLGLVTPDARATLTGYHLPGDLATGPAA
AVVQSGSVFWSLAHNTRSLRFRYLVSSGNEAVLTAADYFAAALSDPHVRLLVGFLEVVRDGERFLDVIQAAHARSVPIVL
LKVGRSELARATVLVHTGAIAGSDAIFRDIMRQYGVILVETLDELYDTAEFLLAGRWPRSFRVGVVTDSGGEKALIADWG
ERIGLEFPPLSPKTAERLRTVLAPYVKLENPLDAWGSGNFDEVYPATLAAFAEDPNIETIVLGTDMVRETEEAHLYAEAM
LALRERTAKPLAVVTNQATGLDCTEVQRLRAAGIPVLQGTEYGYRAIAHAARYSQWRASAPDSLAPPSSLGEIRQEIERW
HQRATRSAHDQPVTLTEYEAKQILARIGLPIPSERWVTCLEEALAAADEIGFPVVLKAQGPNLLHKSDLGAVRLGISDRQ
ALIEAWQGMVETLAATPSLEVTGYLVQRQIPHGLELLLGCLRDSTFGMVVSVGLGGEFVEIWRDVVYRKAPVSPEEADRM
LSELRGAALLAGHRRLAPRDRRAAAEAIARFSWFAVAAADLIEVAEVNPLIVLEEGRGAWAVDSLIVLRAPERRDG
>Mature_716_residues
MQSEMLAPLLRPRSIVVVGASPRRRMARTVLSNLRTFGFRGPVWALHPSGEAVEGFPCFRTVEDLPETPDCAVIALSPEN
TLQAFRALAERGVRAAVLLGSGFAEAGPSGLAIQQEITAIARDRGIAVCGPNCLGLVTPDARATLTGYHLPGDLATGPAA
AVVQSGSVFWSLAHNTRSLRFRYLVSSGNEAVLTAADYFAAALSDPHVRLLVGFLEVVRDGERFLDVIQAAHARSVPIVL
LKVGRSELARATVLVHTGAIAGSDAIFRDIMRQYGVILVETLDELYDTAEFLLAGRWPRSFRVGVVTDSGGEKALIADWG
ERIGLEFPPLSPKTAERLRTVLAPYVKLENPLDAWGSGNFDEVYPATLAAFAEDPNIETIVLGTDMVRETEEAHLYAEAM
LALRERTAKPLAVVTNQATGLDCTEVQRLRAAGIPVLQGTEYGYRAIAHAARYSQWRASAPDSLAPPSSLGEIRQEIERW
HQRATRSAHDQPVTLTEYEAKQILARIGLPIPSERWVTCLEEALAAADEIGFPVVLKAQGPNLLHKSDLGAVRLGISDRQ
ALIEAWQGMVETLAATPSLEVTGYLVQRQIPHGLELLLGCLRDSTFGMVVSVGLGGEFVEIWRDVVYRKAPVSPEEADRM
LSELRGAALLAGHRRLAPRDRRAAAEAIARFSWFAVAAADLIEVAEVNPLIVLEEGRGAWAVDSLIVLRAPERRDG

Specific function: Unknown

COG id: COG1042

COG function: function code C; Acyl-CoA synthetase (NDP forming)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfiQ [H]

Homologues:

Organism=Escherichia coli, GI1788938, Length=635, Percent_Identity=26.4566929133858, Blast_Score=162, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014089
- InterPro:   IPR013650
- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR005809
- InterPro:   IPR016102 [H]

Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]

EC number: NA

Molecular weight: Translated: 77648; Mature: 77648

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50975 ATP_GRASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSEMLAPLLRPRSIVVVGASPRRRMARTVLSNLRTFGFRGPVWALHPSGEAVEGFPCFR
CCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHH
TVEDLPETPDCAVIALSPENTLQAFRALAERGVRAAVLLGSGFAEAGPSGLAIQQEITAI
HHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHH
ARDRGIAVCGPNCLGLVTPDARATLTGYHLPGDLATGPAAAVVQSGSVFWSLAHNTRSLR
HHCCCEEEECCCEEEEECCCCCEEEEEEECCCCCCCCCHHHHEECCCEEEEEECCCCEEE
FRYLVSSGNEAVLTAADYFAAALSDPHVRLLVGFLEVVRDGERFLDVIQAAHARSVPIVL
EEEEEECCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEE
LKVGRSELARATVLVHTGAIAGSDAIFRDIMRQYGVILVETLDELYDTAEFLLAGRWPRS
EECCHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCCCCCC
FRVGVVTDSGGEKALIADWGERIGLEFPPLSPKTAERLRTVLAPYVKLENPLDAWGSGNF
EEEEEEECCCCCEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DEVYPATLAAFAEDPNIETIVLGTDMVRETEEAHLYAEAMLALRERTAKPLAVVTNQATG
CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
LDCTEVQRLRAAGIPVLQGTEYGYRAIAHAARYSQWRASAPDSLAPPSSLGEIRQEIERW
CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
HQRATRSAHDQPVTLTEYEAKQILARIGLPIPSERWVTCLEEALAAADEIGFPVVLKAQG
HHHHHCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
PNLLHKSDLGAVRLGISDRQALIEAWQGMVETLAATPSLEVTGYLVQRQIPHGLELLLGC
CCCEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
LRDSTFGMVVSVGLGGEFVEIWRDVVYRKAPVSPEEADRMLSELRGAALLAGHRRLAPRD
HCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCHH
RRAAAEAIARFSWFAVAAADLIEVAEVNPLIVLEEGRGAWAVDSLIVLRAPERRDG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCEEEEECCCCCCC
>Mature Secondary Structure
MQSEMLAPLLRPRSIVVVGASPRRRMARTVLSNLRTFGFRGPVWALHPSGEAVEGFPCFR
CCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHH
TVEDLPETPDCAVIALSPENTLQAFRALAERGVRAAVLLGSGFAEAGPSGLAIQQEITAI
HHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHH
ARDRGIAVCGPNCLGLVTPDARATLTGYHLPGDLATGPAAAVVQSGSVFWSLAHNTRSLR
HHCCCEEEECCCEEEEECCCCCEEEEEEECCCCCCCCCHHHHEECCCEEEEEECCCCEEE
FRYLVSSGNEAVLTAADYFAAALSDPHVRLLVGFLEVVRDGERFLDVIQAAHARSVPIVL
EEEEEECCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEE
LKVGRSELARATVLVHTGAIAGSDAIFRDIMRQYGVILVETLDELYDTAEFLLAGRWPRS
EECCHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCCCCCC
FRVGVVTDSGGEKALIADWGERIGLEFPPLSPKTAERLRTVLAPYVKLENPLDAWGSGNF
EEEEEEECCCCCEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DEVYPATLAAFAEDPNIETIVLGTDMVRETEEAHLYAEAMLALRERTAKPLAVVTNQATG
CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
LDCTEVQRLRAAGIPVLQGTEYGYRAIAHAARYSQWRASAPDSLAPPSSLGEIRQEIERW
CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
HQRATRSAHDQPVTLTEYEAKQILARIGLPIPSERWVTCLEEALAAADEIGFPVVLKAQG
HHHHHCCCCCCCCEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
PNLLHKSDLGAVRLGISDRQALIEAWQGMVETLAATPSLEVTGYLVQRQIPHGLELLLGC
CCCEECCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
LRDSTFGMVVSVGLGGEFVEIWRDVVYRKAPVSPEEADRMLSELRGAALLAGHRRLAPRD
HCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCHH
RRAAAEAIARFSWFAVAAADLIEVAEVNPLIVLEEGRGAWAVDSLIVLRAPERRDG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]