| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
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The map label for this gene is selA [H]
Identifier: 22127944
GI number: 22127944
Start: 4518293
End: 4519687
Strand: Reverse
Name: selA [H]
Synonym: y4074
Alternate gene names: 22127944
Gene position: 4519687-4518293 (Counterclockwise)
Preceding gene: 22127945
Following gene: 22127942
Centisome position: 98.24
GC content: 54.77
Gene sequence:
>1395_bases GTGACTATGAGCGCAGAACCACACCCATTATATCGCCAGTTACCGGCCATTGATCGCTTACTGAATGAGCCTGAAATGGC CCCTTTATTGGCGGAGTATGGCCCCGTTCTTTTGGCCGATACCCTACGTCAATTACAGGCAGAAGCTCGTGAATATATCG GTCAATTTCATACTCTGGCTGATTGGTGTGCGGACTGGCCTGCCGCTTTACGTCAACGATTGAATCAACGGCAACCCGCG TTAAAACCTGTGTTTAATCTTACTGGCACGGTGCTGCACACCAATTTGGGCCGTGCACCGCTGGCAGAATCTGCTATCGC GGCGGTGACCGATGCCATGCGAAGTGCGGTCACCTTGGAATACTCCTTAGAGGGCGCGGGCCGTGGGCACCGTGATCGGG CTGTCGCCGATTTACTCTGTGCCCTGACCGGTGCGGAAGATGCCTGTATCGTCAATAACAATGCGGCGGCGGTCTTCTTG TTGTTAACGGTCATGGCGGCGGGCAAGCAAGTCGTGGTCTCCCGTGGTGAACTGGTCGAGATTGGCGGTGCGTTTCGTAT TCCTGATGTCATGCGTCAGGCAGGGTGTGAGCTGGTCGAAGTGGGTACCACGAACCGAACACATCTGAAAGATTATCGGC AGGCCATCAATGAAAATACGGGTCTGCTGATGAAAGTTCATACCAGCAATTACAGTATCGAGGGTTTCACGGCCGCAGTA TCCGAACAGCAACTGGCGGCATTGGGGCAAGAGTGTTCCATCCCGACCGCGACCGATTTAGGCAGTGGTTCGCTGGTGGA TATGACCCGTTACGGTTTACCCGCCGAGCCCATGCCACAACAGTTGATTGCGGCAGGCGTAGATTTAGTGACCTTCTCCG GTGATAAACTGTTAGGTGGGCCGCAAGCGGGGATCATTCTCGGTAAAAAACAGTGGATTGAGCGGTTACAGCAACATCCG CTGAAGCGAGCATTGCGGGCCGATAAAATGACACTGGCAGCTTTGGACGCCACCTTGCGCCTCTATCAGCAGCCAGATCG GTTGGTTGAACAACTGCCATCTCTGCGGCTACTGACCCGCCCCGCCTCAGAGATTGCCGCGTGTGCACAACGCCTGCTGG CCCCACTGATTGCCTGTTATGGCACAGATTTCACTTTGGATATTGAATCATGTTGGTCACAAATTGGCAGTGGTTCGCTG CCGGTTGATCGCTTGCCCAGTTGGGCGCTGACGTTTACGCCTAAAGATGGGCGCGGTAGTACATTGGAAGCCTTAACGGC GCGTTGGCGCACACTGACGAAGCCGGTCATTGGTCGTGTGGCTGATGGGCGTTTGTGGCTGGATTTACGCTGTCTGGAGG ATGAGGCGGCGTTGCTAAGGGAATTGGCATCATGA
Upstream 100 bases:
>100_bases TTGATGTAAGGTCAATGACCAATCAGTGATGGGGGTGAGGGCAATCAACGCACAGGCAACTCGACGTATGGCGGGTATAT CGTTTAATTAATTTGTTTGA
Downstream 100 bases:
>100_bases TTATTGTCACCGCAGGCCATGTCGATCATGGCAAAACCACACTTTTACAGGCCATTACCGGGGTTAATGCGGATCGGTTG CCGGAAGAGAAGCAGCGGGG
Product: selenocysteine synthase
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]
Number of amino acids: Translated: 464; Mature: 463
Protein sequence:
>464_residues MTMSAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLADWCADWPAALRQRLNQRQPA LKPVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLEYSLEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFL LLTVMAAGKQVVVSRGELVEIGGAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAV SEQQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGGPQAGIILGKKQWIERLQQHP LKRALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTRPASEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSL PVDRLPSWALTFTPKDGRGSTLEALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS
Sequences:
>Translated_464_residues MTMSAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLADWCADWPAALRQRLNQRQPA LKPVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLEYSLEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFL LLTVMAAGKQVVVSRGELVEIGGAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAV SEQQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGGPQAGIILGKKQWIERLQQHP LKRALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTRPASEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSL PVDRLPSWALTFTPKDGRGSTLEALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS >Mature_463_residues TMSAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLADWCADWPAALRQRLNQRQPAL KPVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLEYSLEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFLL LTVMAAGKQVVVSRGELVEIGGAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAVS EQQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGGPQAGIILGKKQWIERLQQHPL KRALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTRPASEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSLP VDRLPSWALTFTPKDGRGSTLEALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS
Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]
COG id: COG1921
COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selA family [H]
Homologues:
Organism=Escherichia coli, GI2367248, Length=461, Percent_Identity=69.1973969631237, Blast_Score=603, Evalue=1e-174,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR018319 - InterPro: IPR004534 [H]
Pfam domain/function: PF03841 SelA [H]
EC number: =2.9.1.1 [H]
Molecular weight: Translated: 50442; Mature: 50311
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMSAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLA CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH DWCADWPAALRQRLNQRQPALKPVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLE HHHCCCHHHHHHHHHHCCCHHHHHHHCCCHHEECCCCCCCHHHHHHHHHHHHHHHHEEEE YSLEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFLLLTVMAAGKQVVVSRGELVE EEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCEEECCCCEEE IGGAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAV ECCCCCCHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH SEQQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGG HHHHHHHCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCC PQAGIILGKKQWIERLQQHPLKRALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTR CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEHHC PASEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSLPVDRLPSWALTFTPKDGRGS CHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCC TLEALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCC >Mature Secondary Structure TMSAEPHPLYRQLPAIDRLLNEPEMAPLLAEYGPVLLADTLRQLQAEAREYIGQFHTLA CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH DWCADWPAALRQRLNQRQPALKPVFNLTGTVLHTNLGRAPLAESAIAAVTDAMRSAVTLE HHHCCCHHHHHHHHHHCCCHHHHHHHCCCHHEECCCCCCCHHHHHHHHHHHHHHHHEEEE YSLEGAGRGHRDRAVADLLCALTGAEDACIVNNNAAAVFLLLTVMAAGKQVVVSRGELVE EEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCEEECCCCEEE IGGAFRIPDVMRQAGCELVEVGTTNRTHLKDYRQAINENTGLLMKVHTSNYSIEGFTAAV ECCCCCCHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH SEQQLAALGQECSIPTATDLGSGSLVDMTRYGLPAEPMPQQLIAAGVDLVTFSGDKLLGG HHHHHHHCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHCCCCEEEECCCCCCCC PQAGIILGKKQWIERLQQHPLKRALRADKMTLAALDATLRLYQQPDRLVEQLPSLRLLTR CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEEHHC PASEIAACAQRLLAPLIACYGTDFTLDIESCWSQIGSGSLPVDRLPSWALTFTPKDGRGS CHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCC TLEALTARWRTLTKPVIGRVADGRLWLDLRCLEDEAALLRELAS HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA