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The map label for this gene is ybgD [H]

Identifier: 22127933

GI number: 22127933

Start: 4508097

End: 4508741

Strand: Reverse

Name: ybgD [H]

Synonym: y4063

Alternate gene names: 22127933

Gene position: 4508741-4508097 (Counterclockwise)

Preceding gene: 22127934

Following gene: 22127932

Centisome position: 98.0

GC content: 42.79

Gene sequence:

>645_bases
TTGTACTCATTATTAATAATTCTATTATGTGATTGGTATTTCAGAGATATATCCTTTAAATGCAATATCTACATAAAGGT
TTTTAATATGTCTAACGTTAAGAAAAGCACTTTTATTATTGCTTTAGCAACTTTATCTGTTATTTATCAGGCTTTAGCTG
CTGATGCAGGGAATGGGCGTATTAAGTTCACTGGAACGGTTATTAATGCACCGTGCTCAATTGCATTAGATTCTACTGAT
ATTAATGTAGACCTAGGGCAGGTCGCGAATAGGGTTCTGGAGACGGGTAACAAATACTCTCAGAGCGTACGGTATAACAT
TAATCTGCAAGATTGTAGCCTGACGGCTCAAGGGAGTGGGGGGGCCACTTATCCTGCACTGTCTAAAGTCAATGTCACCT
TCAGCGGTATTGCTGATGCGGCGGCTCCAGCCCTGCTGGCTAACACCGGTAGCGCGAAAGGCGTGGGTGTTCGCCTTATT
GGCACTGATGACGCGCTACTCAAAGTGGGTGATACGAGTCCTGATATTAATCTGACATCTGGTCCGAATCAGATTGTATT
TTCTGCTCGTATTGAAGCCACCAGTGCGCCAGTAACTACCGGTACTGTTGTCTCTCAGGCAACCTATGCTCTGAATTATA
AATAA

Upstream 100 bases:

>100_bases
TTATTTTATTTTAGAGAGTAAGATCTCACGGTCATATAATGATTTAATTTCCCTTTTTTATTACATTAGACTCCTTTAAC
AATTTTTAATTTAACCATGG

Downstream 100 bases:

>100_bases
CAAATGTTTAAAGTAATTAAAGGGGAGGTAACTCCCCTCTAATTAATATTATCGCCATAAGACAATGGTTTATATATGCC
ATATAATTCTAAAAGAAAAA

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MYSLLIILLCDWYFRDISFKCNIYIKVFNMSNVKKSTFIIALATLSVIYQALAADAGNGRIKFTGTVINAPCSIALDSTD
INVDLGQVANRVLETGNKYSQSVRYNINLQDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLI
GTDDALLKVGDTSPDINLTSGPNQIVFSARIEATSAPVTTGTVVSQATYALNYK

Sequences:

>Translated_214_residues
MYSLLIILLCDWYFRDISFKCNIYIKVFNMSNVKKSTFIIALATLSVIYQALAADAGNGRIKFTGTVINAPCSIALDSTD
INVDLGQVANRVLETGNKYSQSVRYNINLQDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLI
GTDDALLKVGDTSPDINLTSGPNQIVFSARIEATSAPVTTGTVVSQATYALNYK
>Mature_214_residues
MYSLLIILLCDWYFRDISFKCNIYIKVFNMSNVKKSTFIIALATLSVIYQALAADAGNGRIKFTGTVINAPCSIALDSTD
INVDLGQVANRVLETGNKYSQSVRYNINLQDCSLTAQGSGGATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLI
GTDDALLKVGDTSPDINLTSGPNQIVFSARIEATSAPVTTGTVVSQATYALNYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=189, Percent_Identity=38.0952380952381, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789422, Length=194, Percent_Identity=37.1134020618557, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI87081805, Length=184, Percent_Identity=29.3478260869565, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787781, Length=173, Percent_Identity=30.635838150289, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790773, Length=174, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI87082421, Length=191, Percent_Identity=27.7486910994764, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87081753, Length=163, Percent_Identity=33.1288343558282, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 22577; Mature: 22577

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSLLIILLCDWYFRDISFKCNIYIKVFNMSNVKKSTFIIALATLSVIYQALAADAGNGR
CHHEEEEEEHHHHHHCCEEEEEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCCE
IKFTGTVINAPCSIALDSTDINVDLGQVANRVLETGNKYSQSVRYNINLQDCSLTAQGSG
EEEEEEEEECCEEEEECCCCCEEEHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCC
GATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLIGTDDALLKVGDTSPDINLTS
CCCCCCEEEEEEEEECCCCHHCCEEEECCCCCCCEEEEEEECCCEEEEECCCCCCEEEEC
GPNQIVFSARIEATSAPVTTGTVVSQATYALNYK
CCCEEEEEEEEECCCCCCCCCCEEECEEEEEECC
>Mature Secondary Structure
MYSLLIILLCDWYFRDISFKCNIYIKVFNMSNVKKSTFIIALATLSVIYQALAADAGNGR
CHHEEEEEEHHHHHHCCEEEEEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCCE
IKFTGTVINAPCSIALDSTDINVDLGQVANRVLETGNKYSQSVRYNINLQDCSLTAQGSG
EEEEEEEEECCEEEEECCCCCEEEHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCC
GATYPALSKVNVTFSGIADAAAPALLANTGSAKGVGVRLIGTDDALLKVGDTSPDINLTS
CCCCCCEEEEEEEEECCCCHHCCEEEECCCCCCCEEEEEEECCCEEEEECCCCCCEEEEC
GPNQIVFSARIEATSAPVTTGTVVSQATYALNYK
CCCEEEEEEEEECCCCCCCCCCEEECEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]