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The map label for this gene is rimN [H]

Identifier: 22127897

GI number: 22127897

Start: 4464830

End: 4465414

Strand: Direct

Name: rimN [H]

Synonym: y4027

Alternate gene names: 22127897

Gene position: 4464830-4465414 (Clockwise)

Preceding gene: 22127896

Following gene: 22127898

Centisome position: 97.05

GC content: 46.67

Gene sequence:

>585_bases
GTGAGTCATAGTATGAATCAACAAGAAAATAATTTTGTGCTGGCGGATATAGTGCGGGCATTGCGGCAAGAAGAGGTTAT
CGCTTATCCGACAGAAGCAGTTTTTGGTTTAGGATGCGATCCCGATAGTGAAAAAGCGGTTAATACTTTGCTAGCGTTAA
AACAGCGGCCATGGCAGAAAGGTTTGATCTTGGTTGCCGCTAATTATGCTCAGTTAGAGCCTTATATTAATGATTCAATG
CTTAATGAAATACAACGAGAAACCCTCTTTTCCACTTGGCCGGGGCCGATAACGTGGGTGATACCTGCCCGAGTAGAAAC
ACCGCAATGGCTAACAGGCTGTTTTGACTCATTGGCGGTGAGAGTAAGCAATCACCCACTTGTACAGCAGCTTTGTGCGG
AATATGGCAAGCCGTTAGTGTCAACTAGCGCTAATTTAAGTGGGCATGAGCCGTGCCGCACGGAAGAAGAAGTCAGAATA
CAGTTTGGCCCTTCATTACCGGTGTTATCCGGTCACGTTGGTGGCCGTTTGAATCCATCTGAAATCAGAGATGCCTTAAC
GGGTAAGCGGTTTCGCCAAGGGTAG

Upstream 100 bases:

>100_bases
AAGTGTGGTTATTGCCACTACCCACTGTTAATAGAAAAAAGAACGGCACGGGGTATCAAACGTATCTGTGCCAGTAAGTT
ATGTGGGAAGGCTGTAGCCA

Downstream 100 bases:

>100_bases
GATATTGTATGGATCAGAAGTTTGCAGTATTTGGTAATCCTATTAGTCATAGTAAATCGCCGAGGATCCATACGCTTTTT
TCCGAGCAAACAGGCATTGA

Product: putative ribosome maturation factor

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSHSMNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSM
LNEIQRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRI
QFGPSLPVLSGHVGGRLNPSEIRDALTGKRFRQG

Sequences:

>Translated_194_residues
MSHSMNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSM
LNEIQRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRI
QFGPSLPVLSGHVGGRLNPSEIRDALTGKRFRQG
>Mature_193_residues
SHSMNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSML
NEIQRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRIQ
FGPSLPVLSGHVGGRLNPSEIRDALTGKRFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=190, Percent_Identity=67.8947368421053, Blast_Score=271, Evalue=3e-74,
Organism=Escherichia coli, GI87081864, Length=171, Percent_Identity=25.7309941520468, Blast_Score=65, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321269, Length=159, Percent_Identity=27.6729559748428, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21596; Mature: 21465

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSMNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQK
CCCCCCCCCCCEEHHHHHHHHHHCCEEECCCHHHEECCCCCCHHHHHHHHHHHHHCCCCC
GLILVAANYAQLEPYINDSMLNEIQRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAV
CEEEEEECHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
RVSNHPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRIQFGPSLPVLSGHVGGRLNPS
HCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCHH
EIRDALTGKRFRQG
HHHHHHHHHHHCCC
>Mature Secondary Structure 
SHSMNQQENNFVLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQK
CCCCCCCCCCEEHHHHHHHHHHCCEEECCCHHHEECCCCCCHHHHHHHHHHHHHCCCCC
GLILVAANYAQLEPYINDSMLNEIQRETLFSTWPGPITWVIPARVETPQWLTGCFDSLAV
CEEEEEECHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
RVSNHPLVQQLCAEYGKPLVSTSANLSGHEPCRTEEEVRIQFGPSLPVLSGHVGGRLNPS
HCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCHH
EIRDALTGKRFRQG
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA