| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
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The map label for this gene is icc [H]
Identifier: 22127387
GI number: 22127387
Start: 3896179
End: 3897036
Strand: Reverse
Name: icc [H]
Synonym: y3513
Alternate gene names: 22127387
Gene position: 3897036-3896179 (Counterclockwise)
Preceding gene: 22127388
Following gene: 22127386
Centisome position: 84.7
GC content: 50.35
Gene sequence:
>858_bases TTGGGGGGGCGGCAAAAACAAGGATACCATTTGGAAAGCCTGTTTAAACTGCCTATGGCGAGTGGGGCCAGGGTTAGAAT TTTACAAATAACAGATACCCACCTCTTTGCTGGCGAACATGAGACATTGCTGGGTGTGAATACTTTTCACAGCTATCGCG CGGTATTGGACGCGATTATTGCGGAACAGCACCCGTTTGATCTGGTTGTTGCCACGGGCGATTTGGCTCAGGACCACTCT GTCGCCGCCTATCAGAATTTTGCGAAGGGAATATCTCGCCTGCCTGTGCCTTGCGTTTGGCTGCCCGGTAATCACGATTT CCAGCCAGCAATGTTTGATGCATTGGCTGAGGCGGGGATTGCCCCTTCAAAACAGGTTCTGGCGGGAGAACACTGGCAGA TCCTGTTGCTGGACAGCCAAGTATTTGGCGTACCTTATGGTGAGTTGAGCGACTATCAGTTGGAGTGGATGGAGCGCTGT CTAATCGCGTATCCGGAACGTTACACCTTGATATTGTTGCACCATCATCCTATGCCGTCAGGTTGCACCTGGCTTGATCA ACACAGTTTGCGCAACGCGCATATGTTGGCGGCGATCCTGACTCGTTATCCCCGAGTTACTACGTTATTGTGCGGTCATA TTCATCAAGATTTAGATCTTGACTGGTATGGTAAGCGCTTGCTAGCCAGCCCTTCGACCTGTGTGCAATTTAAACCACAT TGTACTAACTTTACGCTTGATGCTGTGGCACCAGGGTGGCGTTATCTCGATTTACTGCCTGACGGGGGGCTGGAAACTGA GGTTCATCGGTTAGACAGTGACGAATTTTGCCCTGATATGGACTCGGATGGTTATTGA
Upstream 100 bases:
>100_bases GTTGCGCTATTGTTTGGCGCATGGAGCGGTGGCCGTTCCGGTTTGTTAGACAGACTTATGGCCTTGCCTGCAGATAGTCA TAATACGCATAACTATCTGG
Downstream 100 bases:
>100_bases TGAGTACACTTTTATATATTCATGGTTTTAATAGCTCTCCCAGCTCAGCGAAAGCCACGGCGTTTAAAGAGTGGTTGCAG CAACACTATCCGCATATAGA
Product: cyclic 3',5'-adenosine monophosphate phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MGGRQKQGYHLESLFKLPMASGARVRILQITDTHLFAGEHETLLGVNTFHSYRAVLDAIIAEQHPFDLVVATGDLAQDHS VAAYQNFAKGISRLPVPCVWLPGNHDFQPAMFDALAEAGIAPSKQVLAGEHWQILLLDSQVFGVPYGELSDYQLEWMERC LIAYPERYTLILLHHHPMPSGCTWLDQHSLRNAHMLAAILTRYPRVTTLLCGHIHQDLDLDWYGKRLLASPSTCVQFKPH CTNFTLDAVAPGWRYLDLLPDGGLETEVHRLDSDEFCPDMDSDGY
Sequences:
>Translated_285_residues MGGRQKQGYHLESLFKLPMASGARVRILQITDTHLFAGEHETLLGVNTFHSYRAVLDAIIAEQHPFDLVVATGDLAQDHS VAAYQNFAKGISRLPVPCVWLPGNHDFQPAMFDALAEAGIAPSKQVLAGEHWQILLLDSQVFGVPYGELSDYQLEWMERC LIAYPERYTLILLHHHPMPSGCTWLDQHSLRNAHMLAAILTRYPRVTTLLCGHIHQDLDLDWYGKRLLASPSTCVQFKPH CTNFTLDAVAPGWRYLDLLPDGGLETEVHRLDSDEFCPDMDSDGY >Mature_284_residues GGRQKQGYHLESLFKLPMASGARVRILQITDTHLFAGEHETLLGVNTFHSYRAVLDAIIAEQHPFDLVVATGDLAQDHSV AAYQNFAKGISRLPVPCVWLPGNHDFQPAMFDALAEAGIAPSKQVLAGEHWQILLLDSQVFGVPYGELSDYQLEWMERCL IAYPERYTLILLHHHPMPSGCTWLDQHSLRNAHMLAAILTRYPRVTTLLCGHIHQDLDLDWYGKRLLASPSTCVQFKPHC TNFTLDAVAPGWRYLDLLPDGGLETEVHRLDSDEFCPDMDSDGY
Specific function: Affects the expression of the lacZ gene [H]
COG id: COG1409
COG function: function code R; Predicted phosphohydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789410, Length=275, Percent_Identity=70.1818181818182, Blast_Score=387, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013622 - InterPro: IPR004843 - ProDom: PD587589 [H]
Pfam domain/function: PF00149 Metallophos; PF08413 Metallophos_C [H]
EC number: NA
Molecular weight: Translated: 32058; Mature: 31927
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGRQKQGYHLESLFKLPMASGARVRILQITDTHLFAGEHETLLGVNTFHSYRAVLDAII CCCCCCCCCCHHHHHHCCCCCCCEEEEEEEECCEEECCCCCEEEEEHHHHHHHHHHHHHH AEQHPFDLVVATGDLAQDHSVAAYQNFAKGISRLPVPCVWLPGNHDFQPAMFDALAEAGI HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC APSKQVLAGEHWQILLLDSQVFGVPYGELSDYQLEWMERCLIAYPERYTLILLHHHPMPS CCCHHHHCCCCEEEEEECCEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC GCTWLDQHSLRNAHMLAAILTRYPRVTTLLCGHIHQDLDLDWYGKRLLASPSTCVQFKPH CCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHCHHHHCCCCCEEEECCC CTNFTLDAVAPGWRYLDLLPDGGLETEVHRLDSDEFCPDMDSDGY CCCEEEECCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure GGRQKQGYHLESLFKLPMASGARVRILQITDTHLFAGEHETLLGVNTFHSYRAVLDAII CCCCCCCCCHHHHHHCCCCCCCEEEEEEEECCEEECCCCCEEEEEHHHHHHHHHHHHHH AEQHPFDLVVATGDLAQDHSVAAYQNFAKGISRLPVPCVWLPGNHDFQPAMFDALAEAGI HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCC APSKQVLAGEHWQILLLDSQVFGVPYGELSDYQLEWMERCLIAYPERYTLILLHHHPMPS CCCHHHHCCCCEEEEEECCEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC GCTWLDQHSLRNAHMLAAILTRYPRVTTLLCGHIHQDLDLDWYGKRLLASPSTCVQFKPH CCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHCHHHHCCCCCEEEECCC CTNFTLDAVAPGWRYLDLLPDGGLETEVHRLDSDEFCPDMDSDGY CCCEEEECCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]